Merge branch 'main' into rm-manual-install #1601

	name: CI test

	# Trigger the workflow on push and daily cron job
	on:
	push:
	schedule:
	- cron: '5 0 * * *'

	jobs:
	shellcheck:
	# See https://github.com/koalaman/shellcheck/wiki
	# for explanations of ShellCheck error codes
	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@v3
	- name: ShellCheck
	run: \|
	shellcheck -x $(find -name '*.sh')

	build:
	name: ${{ matrix.os }}
	runs-on: ${{ matrix.os }}
	strategy:
	fail-fast: false
	matrix:
	os: [ubuntu-latest, macos-latest]

	steps:
	- uses: actions/checkout@v3
	- name: Install prerequisites
	run: \|
	[[ $(uname) == Linux ]] && sudo apt-get update && sudo apt-get install -y openmpi-bin libopenmpi-dev
	[[ $(uname) == Darwin ]] && brew install openmpi
	./install.sh
	- name: Version info
	run: \|
	source miniforge3/bin/activate ceesd
	./version.sh --requirements-file=./mirgecom/requirements.txt --output-requirements=myreq.txt --output-conda-env=myenv.yml

	# Don't build pyopencl as that is difficult
	cat myreq.txt \| sed /pyopencl/d > req.txt
	pip install -r req.txt
	- name: Run update
	run: \|
	./pull-packages.sh -x
	- name: Reinstall emirge env with new requirements.txt
	run: \|
	./install.sh --env-name=reinstall_env --pip-pkgs=req.txt
	- name: Reinstall conda env with new env file
	run: \|
	./install.sh --conda-env=myenv.yml --pip-pkgs=req.txt
	- name: Run examples
	run: \|
	source miniforge3/bin/activate ceesd
	./mirgecom/examples/run_examples.sh ./mirgecom/examples

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