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Add AV to NS #373

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Closed

Add AV to NS #373

wants to merge 163 commits into from

Commits on Oct 28, 2020

  1. Initial implementation of artificial viscosity for the euler equations

    @w-hagen
    w-hagen committed Oct 28, 2020
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Commits on Nov 1, 2020

  1. Initial implementation of smoothness indicator

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    w-hagen committed Nov 1, 2020
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Commits on Nov 3, 2020

  1. Updated modal smoothness indicator to mode_ids to select highest mode

    @w-hagen
    w-hagen committed Nov 3, 2020
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Commits on Nov 6, 2020

  1. Fixed updated artificial viscosity implementation to use desired equa… 

    …tions
    @w-hagen
    w-hagen committed Nov 6, 2020
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  2. Add boundary condition function to return projected boundary solution

    @w-hagen
    w-hagen committed Nov 6, 2020
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  3. Added double mach reflection example problem

    @w-hagen
    w-hagen committed Nov 6, 2020
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  4. Added double mach reflection example problem

    @w-hagen
    w-hagen committed Nov 6, 2020
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  5. Remove reference to unnecessary heat operator

    @w-hagen
    w-hagen committed Nov 6, 2020
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Commits on Nov 20, 2020

  1. Fixed error in calculating face fluxes across ranks

    @w-hagen
    w-hagen committed Nov 20, 2020
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  2. Removed unessecary reference to heat operator

    @w-hagen
    w-hagen committed Nov 20, 2020
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  3. Fixed error in not distributing grid

    @w-hagen
    w-hagen committed Nov 20, 2020
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  4. Added shock indicator and integrated with artificial viscosity

    @w-hagen
    w-hagen committed Nov 20, 2020
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  5. Added output field for shock indicator

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    w-hagen committed Nov 20, 2020
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Commits on Dec 1, 2020

  1. Modified stepping parameters for scaling tests

    @w-hagen
    w-hagen committed Dec 1, 2020
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Commits on Jan 20, 2021

  1. Fixed artifical viscosity boundary conditions

    @w-hagen
    w-hagen committed Jan 20, 2021
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Commits on Feb 3, 2021

  1. Merge branch 'master' into av-mrg-master

    @MTCam
    MTCam committed Feb 3, 2021
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  2. Bring back functions inadvertently removed in hand merge

    @MTCam
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Commits on Feb 4, 2021

  1. Minimum changes to bring boundary conditions up to date with mainline… 

    … emirge
    @w-hagen
    w-hagen committed Feb 4, 2021
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  2. Merges the upstream master

    @MTCam
    MTCam authored Feb 4, 2021
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  3. Silence flake8.

    @MTCam
    MTCam committed Feb 4, 2021
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  4. Silence pydocstyle

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  5. Merge pull request #3 from w-hagen/silence-pydocstyle 

    Silence pydocstyle.
    @w-hagen
    w-hagen authored Feb 4, 2021
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  6. Merge pull request #2 from w-hagen/silence-flake8 

    Silence flake8
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    w-hagen authored Feb 4, 2021
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  7. merge updated master into artificial viscosity branch

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  8. Merge pull request #4 from w-hagen/av-mrg-master 

    Av mrg master
    @w-hagen
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  9. Remove un-needed make_obj_array calls

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    w-hagen committed Feb 4, 2021
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  10. Merge pull request #5 from w-hagen/remove-mkobjarray 

    Remove un-needed make_obj_array calls
    @w-hagen
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  11. Rework boundary conditions to avoid duplicating code

    @w-hagen
    w-hagen committed Feb 4, 2021
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  12. Fix docstyle, remove unused import

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    w-hagen committed Feb 4, 2021
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Commits on Feb 5, 2021

  1. Expose smoothness indicator parameters

    @w-hagen
    w-hagen committed Feb 5, 2021
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Commits on Feb 26, 2021

  1. Fixed boundary calls to self

    @w-hagen
    w-hagen committed Feb 26, 2021
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  2. Fixed flake8 line to long

    @w-hagen
    w-hagen committed Feb 26, 2021
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  3. Merge pull request #6 from w-hagen/av-boundary-rework 

    Rework boundary conditions to avoid duplicating code
    @w-hagen
    w-hagen authored Feb 26, 2021
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Commits on Mar 2, 2021

  1. Clean up AdiabaticSlipBoundary for artificial viscosity condition.

    @w-hagen
    w-hagen committed Mar 2, 2021
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Commits on Mar 12, 2021

  1. Added inital documentation to artificial viscosity routines (#8) 

    * Added inital documentation to artificial viscosity routines

* Fix style issues

* more style fixes

Co-authored-by: Wyatt Hagen <wahagen2@illinois.edu>
    @w-hagen
    w-hagen and w-hagen authored Mar 12, 2021
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  2. fixed flake8 error

    @w-hagen
    w-hagen committed Mar 12, 2021
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  3. Merge branch 'artificial_viscosity' of github.com:w-hagen/mirgecom in… 

    …to artificial_viscosity
    @w-hagen
    w-hagen committed Mar 12, 2021
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  4. Fixed too long line

    @w-hagen
    w-hagen committed Mar 12, 2021
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  5. Added tests to artificial viscosity routines. (#9) 

    * Added tests to artificial viscosity routines.

* Fixed flake8 errors.

* Fixed error in getting basis polynomials

* Fixed style errors

Co-authored-by: Wyatt Hagen <wahagen2@illinois.edu>
    @w-hagen
    w-hagen and w-hagen authored Mar 12, 2021
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  6. Bring branch up to main

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    w-hagen committed Mar 12, 2021
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  7. Merge branch 'artificial_viscosity' of github.com:w-hagen/mirgecom in… 

    …to artificial_viscosity
    @w-hagen
    w-hagen committed Mar 12, 2021
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Commits on Mar 13, 2021

  1. Fixed missed merge conflict.

    @w-hagen
    w-hagen committed Mar 13, 2021
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Commits on Mar 14, 2021

  1. Fixed errors in dobule mach initialization.

    @w-hagen
    w-hagen committed Mar 14, 2021
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  2. Fixed error in initialization.

    @w-hagen
    w-hagen committed Mar 14, 2021
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  3. Cleaned up artificial viscosity routines.

    @w-hagen
    w-hagen committed Mar 14, 2021
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  4. Fixed errors in calling gmsh

    @w-hagen
    w-hagen committed Mar 14, 2021
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  5. Add gmsh as requirement

    @w-hagen
    w-hagen committed Mar 14, 2021
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Commits on Mar 15, 2021

  1. Fix some style issues and add temporary fix for Issue #280

    @w-hagen
    w-hagen committed Mar 15, 2021
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  2. Fix documentation grammer. 

    Co-authored-by: Mike Campbell <mtcampbe@illinois.edu>
    @w-hagen @MTCam
    w-hagen and MTCam authored Mar 15, 2021
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  3. Renamed shock parameters to be more descriptive.

    @w-hagen
    w-hagen committed Mar 15, 2021
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  4. Added normal shock relations calculator to DoubleMahcReflection case.

    @w-hagen
    w-hagen committed Mar 15, 2021
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  5. Remove linter changes for not my file

    @w-hagen
    w-hagen committed Mar 15, 2021
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  6. use viz_fields to visualize tagged cells.

    @w-hagen
    w-hagen committed Mar 15, 2021
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  7. Added interface parameter documentation.

    @w-hagen
    w-hagen committed Mar 15, 2021
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  8. Remove linting modification to simutil.py

    @w-hagen
    w-hagen committed Mar 15, 2021
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  9. Fixed tests to reflect change in smoothness indicator parameters.

    @w-hagen
    w-hagen committed Mar 15, 2021
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Commits on Mar 26, 2021

  1. Update mirgecom/initializers.py 

    Co-authored-by: Mike Campbell <mtcampbe@illinois.edu>
    @w-hagen @MTCam
    w-hagen and MTCam authored Mar 26, 2021
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Commits on Apr 8, 2021

  1. Merge branch 'main' into artificial_viscosity

    @MTCam
    MTCam authored Apr 8, 2021
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Commits on Apr 25, 2021

  1. Refactor AV (#12) 

    * CI: install mirgecom branch directly (#315)

* Run flake8 in Github CI on target Py version (#313)

* Run flake8 in Github CI on target Py version

* Bump Python compat target to 3.8

* Bump Py compatibility target in Github CI to 3.8

Co-authored-by: Matthias Diener <mdiener@illinois.edu>

* fix CI runs (#316)

- Run `brew update` to fix spurious homebrew downloading errors
- Make sure to be able to run without a specified branch (for e.g. scheduled CI runs)
- prefer mpich over openmpi, as it can show better error messages in CI

* skip clone on CI (#318)

* Update half-baked, push to save.

* Refactor AV to address remaining review comments, merge with main, make it closer to consistent with NS.

* Fix up example to use new AV, remove temporary fix for resolved issue.

* Fix slipwall boundary issue for multispecies

* Tweak for multispecies.

* Add documentation for Persson smoothness indicator

* Remove function/module name ambiguity

* Update doublemach to use av_operator interface

* Update test to use av_operator interface

* Update docs to correct rendering, formatting

* Update docs to correct rendering, formatting

* Update docs to correct rendering, formatting

Co-authored-by: Matthias Diener <mdiener@illinois.edu>
Co-authored-by: Andreas Klöckner <inform@tiker.net>
    @MTCam @matthiasdiener @inducer
    3 people authored Apr 25, 2021
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Commits on Apr 26, 2021

  1. Merge branch 'main' into artificial_viscosity

    @MTCam
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  2. Add some comments for docs, try to address @thomasgibson comments (#13)

    @MTCam
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  3. Update examples/doublemach-mpi.py to get rank properly 

    Co-authored-by: Matt Smith <mjsmith1@gmail.com>
    @w-hagen @majosm
    w-hagen and majosm authored Apr 26, 2021
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  4. Update logic to check if file exists 

    Co-authored-by: Matt Smith <mjsmith1@gmail.com>
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    w-hagen and majosm authored Apr 26, 2021
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  5. Update documenatation 

    Co-authored-by: Matt Smith <mjsmith1@gmail.com>
    @w-hagen @majosm
    w-hagen and majosm authored Apr 26, 2021
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  6. Update documentation 

    Co-authored-by: Matt Smith <mjsmith1@gmail.com>
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  7. Update documentation 

    Co-authored-by: Matt Smith <mjsmith1@gmail.com>
    @w-hagen @majosm
    w-hagen and majosm authored Apr 26, 2021
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  8. Update documentation 

    Co-authored-by: Matt Smith <mjsmith1@gmail.com>
    @w-hagen @majosm
    w-hagen and majosm authored Apr 26, 2021
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  9. Update documentation 

    Co-authored-by: Matt Smith <mjsmith1@gmail.com>
    @w-hagen @majosm
    w-hagen and majosm authored Apr 26, 2021
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  10. Update documentation 

    Co-authored-by: Matt Smith <mjsmith1@gmail.com>
    @w-hagen @majosm
    w-hagen and majosm authored Apr 26, 2021
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  11. Update documentation 

    Co-authored-by: Matt Smith <mjsmith1@gmail.com>
    @w-hagen @majosm
    w-hagen and majosm authored Apr 26, 2021
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  12. Update documentation 

    Co-authored-by: Matt Smith <mjsmith1@gmail.com>
    @w-hagen @majosm
    w-hagen and majosm authored Apr 26, 2021
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  13. Update documentation 

    Co-authored-by: Matt Smith <mjsmith1@gmail.com>
    @w-hagen @majosm
    w-hagen and majosm authored Apr 26, 2021
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  14. Update documentation 

    Co-authored-by: Matt Smith <mjsmith1@gmail.com>
    @w-hagen @majosm
    w-hagen and majosm authored Apr 26, 2021
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  15. Update documentation 

    Co-authored-by: Matt Smith <mjsmith1@gmail.com>
    @w-hagen @majosm
    w-hagen and majosm authored Apr 26, 2021
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Commits on Apr 27, 2021

  1. Fix flake8/docstyle issue

    @w-hagen
    w-hagen committed Apr 27, 2021
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  2. Clean up doublemach case documentation and remove dim as parameter.

    @w-hagen
    w-hagen committed Apr 27, 2021
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  3. Tweak the doublemach docs and implementation just a bit (#15) 

    * Tweak the doublemach docs and implementation just a bit to remove some unneeded stuff.

* tweak verbiage per @w-hagen suggestion to be more correct and complete
    @MTCam
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  4. Remove superfluous isinstance check 

    Co-authored-by: Matt Smith <mjsmith1@gmail.com>
    @w-hagen @majosm
    w-hagen and majosm authored Apr 27, 2021
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  5. Use added grudge functionality to get modal solution

    @w-hagen
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  6. Updated AV documentation to reflect new use of cv-specific fluid func… 

    …tions
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Commits on Apr 28, 2021

  1. Merge branch 'main' into artificial_viscosity

    @MTCam
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  2. remove commented out import 

    Co-authored-by: Thomas H. Gibson <gibsonthomas1120@hotmail.com>
    @w-hagen @thomasgibson
    w-hagen and thomasgibson authored Apr 28, 2021
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Commits on Apr 29, 2021

  1. Fix sign error in doublemach case

    @w-hagen
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  2. Merge branch 'main' into artificial_viscosity

    @MTCam
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  3. Replace join_conserved_vectors with np.stack per @majosm suggestion. (#… 

    …16)

* Replace join_conserved_vectors with np.stack per @majosm suggestion.

* Make it work for scalar Q

* Clean up grad_q boundary routine after array shape corrections.

* Update docs per @w-hagen review comments.

* Nudge doc precision
    @MTCam
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  4. Merge branch 'main' into artificial_viscosity

    @MTCam
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  5. Rename vars more precisely in AV boundary routine. (#17) 

    * Rename vars more precisely in AV boundary routine.

* Correct mistaken variable identity.
    @MTCam
    MTCam authored Apr 29, 2021
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  6. Make artificial viscosity documentation more general (#18) 

    * Make artificial viscosity documentation more general

* One line header for artificial viscosity module
    @thomasgibson
    thomasgibson authored Apr 29, 2021
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  7. Fixed spelling 

    Co-authored-by: Matt Smith <mjsmith1@gmail.com>
    @w-hagen @majosm
    w-hagen and majosm authored Apr 29, 2021
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Commits on Apr 30, 2021

  1. Remove join_conserved_vectors 

    Co-authored-by: Mike Campbell <mtcampbe@illinois.edu>
    @w-hagen @MTCam
    w-hagen and MTCam authored Apr 30, 2021
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Commits on May 4, 2021

  1. Merge branch 'main' into artificial_viscosity

    @MTCam
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Commits on May 6, 2021

  1. Merge branch 'main' into bc-unification-main

    @MTCam
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  2. Merge branch 'main' into artificial_viscosity

    @MTCam
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  3. Rewrite shock indicator, cache program and mode computations (#20)

    @thomasgibson
    thomasgibson authored May 6, 2021
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  4. Update double mach example (#22)

    @thomasgibson
    thomasgibson authored May 6, 2021
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  5. Clean up object array handling in flux routines (#19) 

    * clean up object array handling in flux routines

* add note about get_array_container_context
    @majosm
    majosm authored May 6, 2021
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Commits on May 7, 2021

  1. Merge branch 'main' into bc-unification-main

    @MTCam
    MTCam authored May 7, 2021
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  2. Merge branch 'main' into artificial_viscosity

    @MTCam
    MTCam authored May 7, 2021
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  3. Sooth the bugbear.

    @MTCam
    MTCam authored May 7, 2021
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  4. Unpoke the bugbear.

    @MTCam
    MTCam authored May 7, 2021
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Commits on May 10, 2021

  1. Merge branch 'navier-stokes' into merge-ns-to-bc-unification

    @MTCam
    MTCam committed May 10, 2021
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  2. Merge to Navier-Stokes.

    @MTCam
    MTCam committed May 10, 2021
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  3. Pull AV boundaries into NS.

    @MTCam
    MTCam committed May 10, 2021
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Commits on May 11, 2021

  1. AV misc fixes (#23) 

    * remove call to deprecated create_parallel_grid

* remove use of deprecated n parameter

* add boundary_kwargs to av_operator

* raise exception instead of asserting
    @majosm
    majosm authored May 11, 2021
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  2. Rename modes_active_flag

    @w-hagen
    w-hagen committed May 11, 2021
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  3. Account for slight interface change in tests.

    @MTCam
    MTCam committed May 11, 2021
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  4. Update doublemach to use Navier-Stokes, update inviscid boundaries st… 

    … they can be used in NS
    @MTCam
    MTCam committed May 11, 2021
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  5. Tweak a bit for new interface and VTU overwrite for vortex example.

    @MTCam
    MTCam committed May 11, 2021
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  6. Merge branch 'navier-stokes' into add-av-to-ns

    @MTCam
    MTCam committed May 11, 2021
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  7. Merge branch 'navier-stokes' into add-av-to-ns

    @MTCam
    MTCam committed May 11, 2021
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  8. Merge branch 'navier-stokes' into add-av-to-ns

    @MTCam
    MTCam committed May 11, 2021
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  9. Fix some cosmetics only.

    @MTCam
    MTCam committed May 11, 2021
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Commits on May 13, 2021

  1. Merge branch 'main' into artificial_viscosity

    @MTCam
    MTCam authored May 13, 2021
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  2. Merge branch 'navier-stokes' into add-av-to-ns

    @MTCam
    MTCam committed May 13, 2021
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  3. Pick up current AV from @w-hagen #213

    @MTCam
    MTCam committed May 13, 2021
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Commits on May 17, 2021

  1. Fix passing of time variable to boundary (#342)

    @w-hagen
    w-hagen authored May 17, 2021
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Commits on May 19, 2021

  1. Merge branch 'navier-stokes' into mrgns

    @MTCam
    MTCam committed May 19, 2021
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  2. Add AV interface routine to Moving Noslip.

    @MTCam
    MTCam committed May 19, 2021
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Commits on May 20, 2021

  1. Merge navier-stokes branch.

    @MTCam
    MTCam committed May 20, 2021
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Commits on May 21, 2021

  1. Merge branch 'navier-stokes' into mrgns

    @MTCam
    MTCam committed May 21, 2021
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Commits on May 23, 2021

  1. merge main docs

    @MTCam
    MTCam committed May 23, 2021
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  2. Merge down Wyatts BC catch #352

    @MTCam
    MTCam committed May 23, 2021
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  3. Merge branch 'navier-stokes' into mrgns

    @MTCam
    MTCam committed May 23, 2021
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Commits on Jun 1, 2021

  1. Merge branch 'navier-stokes' into mrgns-to-av-to-ns

    @MTCam
    MTCam committed Jun 1, 2021
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  2. Merge branch 'ns-to-cv-actx' into add-av-to-ns-actx

    @MTCam
    MTCam committed Jun 1, 2021
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Commits on Jun 2, 2021

  1. Check for CV type.

    @MTCam
    MTCam committed Jun 2, 2021
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Commits on Jun 7, 2021

  1. Merge branch 'navier-stokes' into mrgns

    @MTCam
    MTCam committed Jun 7, 2021
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  2. Fix "indento" that makes doublemach hang at the end!

    @MTCam
    MTCam committed Jun 7, 2021
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Commits on Jun 8, 2021

  1. Merge branch 'ns-to-cv-actx' into add-av-to-ns-actx

    @MTCam
    MTCam committed Jun 8, 2021
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  2. Merge branch 'ns-to-cv-actx' into add-av-to-ns-actx

    @MTCam
    MTCam committed Jun 8, 2021
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Commits on Jun 9, 2021

  1. Initial stab at using CV array container inside AV on NS.

    @MTCam
    MTCam committed Jun 9, 2021
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  2. Merge branch 'navier-stokes' into mrgns

    @MTCam
    MTCam committed Jun 9, 2021
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  3. Update ns api in doublemach example

    @MTCam
    MTCam committed Jun 9, 2021
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  4. Use explicit named args in call to s_bnd_flux

    @MTCam
    MTCam committed Jun 9, 2021
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  5. Wriggle into place with new data structures.

    @MTCam
    MTCam committed Jun 9, 2021
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  6. Try to update everything for new API

    @MTCam
    MTCam committed Jun 9, 2021
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Commits on Jun 11, 2021

  1. Merge branch 'add-av-to-ns' into add-av-to-ns-actx

    @MTCam
    MTCam authored Jun 11, 2021
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  2. Merge branch 'navier-stokes' into mrgns

    @MTCam
    MTCam committed Jun 11, 2021
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Commits on Jun 25, 2021

  1. Merge with main AV development

    @MTCam
    MTCam committed Jun 25, 2021
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  2. Merge branch 'main' into mrgmn

    @MTCam
    MTCam committed Jun 25, 2021
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  3. Merge branch 'navier-stokes' into mrgns

    @MTCam
    MTCam committed Jun 25, 2021
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  4. Merge branch 'main' into add-av-to-ns-actx

    @MTCam
    MTCam authored Jun 25, 2021
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Commits on Jun 29, 2021

  1. Attempt to fix pylint issue.

    @MTCam
    MTCam authored Jun 29, 2021
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  2. Attempt to fix pylint issues.

    @MTCam
    MTCam authored Jun 29, 2021
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  3. Fix the pylint issue with a proper import.

    @MTCam
    MTCam authored Jun 29, 2021
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Commits on Jul 10, 2021

  1. Merge branch 'main' into test-merge

    @MTCam
    MTCam committed Jul 10, 2021
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  2. Tag iel, idof with Concurrent(Element|DOF)InameTag (#419) 

    Co-authored-by: Michael Campbell <mtcampbe@illinois.edu>
    @kaushikcfd @MTCam
    kaushikcfd and MTCam authored Jul 10, 2021
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  3. Merge branch 'navier-stokes' into test-merge

    @MTCam
    MTCam committed Jul 10, 2021
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  4. Modernize doublemach example.

    @MTCam
    MTCam committed Jul 10, 2021
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  5. Merge branch 'fix-merge-issue' into add-av-to-ns-actx

    @MTCam
    MTCam committed Jul 10, 2021
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Commits on Aug 21, 2021

  1. Merge upstream

    @MTCam
    MTCam committed Aug 21, 2021
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  2. Update from upstream

    @MTCam
    MTCam committed Aug 21, 2021
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  3. Merge branch 'navier-stokes' into add-av-to-ns-actx

    @MTCam
    MTCam committed Aug 21, 2021
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  4. Add back gmsh to requirements

    @MTCam
    MTCam committed Aug 21, 2021
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Commits on Aug 22, 2021

  1. Merge branch 'navier-stokes' into add-av-to-ns-actx

    @MTCam
    MTCam committed Aug 22, 2021
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Commits on Aug 23, 2021

  1. Merge branch 'navier-stokes' into add-av-to-ns-actx

    @MTCam
    MTCam committed Aug 23, 2021
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  2. Update doublemach example with developments from upstream

    @MTCam
    MTCam committed Aug 23, 2021
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  3. Merge branch 'navier-stokes' into add-av-to-ns-actx

    @MTCam
    MTCam committed Aug 23, 2021
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  4. Fix bug in av boundary routine

    @MTCam
    MTCam committed Aug 23, 2021
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Commits on Aug 24, 2021

  1. Merge branch 'navier-stokes' into add-av-to-ns-actx

    @MTCam
    MTCam committed Aug 24, 2021
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Commits on Aug 25, 2021

  1. Merge branch 'navier-stokes' into add-av-to-ns-actx

    @MTCam
    MTCam committed Aug 25, 2021
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Commits on Dec 14, 2021

  1. Merge branch 'navier-stokes' into add-av-to-ns-actx

    @MTCam
    MTCam committed Dec 14, 2021
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  2. Try gmsh in conda instead.

    @MTCam
    MTCam committed Dec 14, 2021
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