Skip to content

Issues: imgag/megSAP

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

50 Open 217 Closed
50 Open 217 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

data_setup vs. no_sync
#362 opened Mar 18, 2025 by BeneKenobi
@marc-sturm
6
Improve DRAGEN support
#361 opened Mar 13, 2025 by leonschuetz
4 tasks
LongReads: Add support for superaccuracy
#360 opened Mar 6, 2025 by leonschuetz
5 tasks
Add ORA support
#359 opened Mar 6, 2025 by leonschuetz
1
NSXPlus: Add file integrity checks
#358 opened Mar 6, 2025 by leonschuetz
2 tasks done
@leonschuetz
Seperate tumor-normal and tumor-only pipeline
#352 opened Feb 27, 2025 by KilianIlius
@KilianIlius
DeepVariant GPU version
#351 opened Feb 27, 2025 by KilianIlius
2 tasks
@KilianIlius
LongReads: Statistics for methylation
#349 opened Feb 26, 2025 by leonschuetz
2 tasks
Validation no abra/ no soft-clipping
#348 opened Feb 25, 2025 by KilianIlius
26 of 30 tasks
@KilianIlius
2
tumor-only analysis no longer in sample folder
#345 opened Feb 20, 2025 by marc-sturm
2 tasks
@KilianIlius
LongReads: test tandem-genotypes
#341 opened Feb 6, 2025 by leonschuetz
1 task
Create script for SV validation
#337 opened Jan 30, 2025 by leonschuetz
@leonschuetz
LongReads: add phasing tracks for multi-sample
#333 opened Jan 29, 2025 by leonschuetz
LongReads: Mosaic Calling
#330 opened Jan 22, 2025 by leonschuetz
LongReads: Implement mosaic calling
#327 opened Jan 16, 2025 by leonschuetz
LongReads: update straglr
#326 opened Jan 16, 2025 by leonschuetz
1 task
2
LongReads: Support restarted runs in runqc_parser_ont.php
#318 opened Dec 9, 2024 by leonschuetz
3 tasks
backup_run_analyzed.php: add script for analyzed data backup mode
#312 opened Nov 21, 2024 by marc-sturm
@marc-sturm
Calls to DB dependent tool when running without db
#309 opened Nov 18, 2024 by BeneKenobi
2
LongReads: create validation for different dorado versions
#301 opened Oct 10, 2024 by leonschuetz
5 tasks done
4
Annotation problem
#295 opened Sep 26, 2024 by allatarr
6
LongRead: Integrate Paraphase
#291 opened Sep 12, 2024 by leonschuetz
1 of 3 tasks
1
Add documentation page for long-read trio/multi sample analysis
#290 opened Aug 28, 2024 by marc-sturm
@leonschuetz
Unable to run the trio_longread.php pipeline question
#288 opened Aug 27, 2024 by noob9721
@marc-sturm
3
Refactor copy_sample.php
#287 opened Aug 22, 2024 by leonschuetz
2 tasks
ProTip! What’s not been updated in a month: updated:<2025-02-20.