Add "compare set" and backtranslation to incompatibilities

inab · Sep 27, 2024 · a42fea2 · a42fea2
1 parent 63eecd5
commit a42fea2
Show file tree

Hide file tree

Showing 2 changed files with 50 additions and 1 deletion.
diff --git a/docs/source/_static/trimal_doc.css b/docs/source/_static/trimal_doc.css
@@ -2,4 +2,16 @@
 
 .wy-nav-content {
     max-width: 1200px;
-}
+}
+
+.green {
+    color: green;
+}
+
+.red {
+    color: red;
+}
+
+table td {
+    text-align: center;
+}
diff --git a/docs/source/usage.rst b/docs/source/usage.rst
@@ -466,6 +466,43 @@ and a sequence for each donor, with their SNP applied.
         Only valid in combination with -vcf.
         Still applies min-quality and min-coverage when provided.
 
+
+Incompatibilities
+====================
+
+.. role:: red
+.. role:: green
+
+
+Compare set
+------------------
+
++----------------------+-------------+-------------+-------------+
+|                      | in          | compareset  | forceselect |
++======================+=============+=============+=============+
+| **in**               |             | :red:`x`    | :red:`x`    |
++----------------------+-------------+-------------+-------------+
+| **compareset**       | :red:`x`    |             | :green:`✓`  |
++----------------------+-------------+-------------+-------------+
+| **forceselect**      | :red:`x`    | :green:`✓`  |             |
++----------------------+-------------+-------------+-------------+
+
+
+Backtranslation
+------------------
+
++----------------------+-----------------+------------------+
+|                      | ignorestopcodon | splitbystopcodon |
++======================+=================+==================+
+| **ignorestopcodon**  |                 | :red:`x`         |
++----------------------+-----------------+------------------+
+| **splitbystopcodon** | :red:`x`        |                  |
++----------------------+-----------------+------------------+
+
+
+
+
+
 .. _some-examples:
 Some Examples
 ======================