update general NEWS.md #440
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| name: On push to protocol branches build the protocol and save the result to an artifact | |
| on: | |
| push: | |
| branches: 's[fpioa]p**' | |
| jobs: | |
| build-and-save: | |
| runs-on: ubuntu-20.04 | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v2 | |
| with: | |
| ref: ${{ github.event.pull_request.head.sha }} # checkout PR head commit | |
| fetch-depth: 0 # Fetch all history for .GitInfo and .Lastmod | |
| - name: Setup R | |
| uses: r-lib/actions/setup-r@v2 | |
| - name: Setup pandoc and pandoc-citeproc | |
| uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-tinytex@v2 | |
| - run: tlmgr --version | |
| - name: Query dependencies | |
| run: | | |
| install.packages('remotes', type = "source") | |
| saveRDS(remotes::dev_package_deps(dependencies = NA), ".github/depends.Rds", version = 2) | |
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
| shell: Rscript {0} | |
| - name: Restore R package cache | |
| uses: actions/cache@v2 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
| - name: Install system dependencies | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo apt-get install libcurl4-openssl-dev libharfbuzz-dev libfribidi-dev libgit2-dev | |
| - name: Install dependencies | |
| run: | | |
| remotes::install_deps(dependencies = NA, type = "source") #fails to install protocolhelper | |
| remotes::install_github("inbo/protocolhelper", type = "source") | |
| shell: Rscript {0} | |
| - name: Session info | |
| run: | | |
| options(width = 100) | |
| pkgs <- installed.packages()[, "Package"] | |
| sessioninfo::session_info(pkgs, include_base = TRUE) | |
| shell: Rscript {0} | |
| - name: Set branch name | |
| run: | | |
| echo "branch_name=$(echo ${GITHUB_REF#refs/heads/})" >> $GITHUB_ENV | |
| - name: Print branch name | |
| run: | | |
| echo 'The branch name is' '${{ env.branch_name }}' | |
| - name: Render protocol (only the one that is the focus of the PR) | |
| run: | | |
| Rscript -e 'protocolhelper::render_protocol("${{ env.branch_name }}", "artifact")' | |
| - name: Archive protocol to an artifact | |
| if: ${{ success() }} | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: pr-${{ env.PR_NUMBER }}-inbo-protocol | |
| path: ./**/artifact/ | |
| env: | |
| PR_NUMBER: ${{ github.event.number }} |