Move ala-hub config so it can be downloaded more easily for the ecs d…

…eployment

config/ala-hub/ala-hub-config.properties

@@ -0,0 +1,268 @@
+# Grails settings
+grails.serverURL=http://records.la-flanders.org
+grails.resources.work.dir=/data/ala-hub/cache
+
+# CAS Config
+serverName=http://records.la-flanders.org
+security.cas.casServerName=http://auth.la-flanders.org
+security.cas.appServerName=http://records.la-flanders.org
+security.cas.casServerUrlPrefix=http://auth.la-flanders.org/cas
+security.cas.casServerLoginUrl=http://auth.la-flanders.org/cas/login
+security.cas.casServerLogoutUrl=http://auth.la-flanders.org/cas/logout
+security.cas.loginUrl=http://auth.la-flanders.org/cas/login
+security.cas.logoutUrl=http://auth.la-flanders.org/cas/logout
+security.cas.uriFilterPattern=/admin/*,/alaAdmin/*,/download/*
+security.cas.authenticateOnlyIfLoggedInFilterPattern=/occurrences/*,/explore/your-area,/query,/proxy/download/*,/
+security.cas.authCookieName=ALA-Auth
+security.cas.bypass=false
+disableCAS=false
+
+server.address=127.0.0.1
+server.port=8080
+server.contextPath=
+# Default Locale
+defaultLocale=en
+
+# Legacy CAS properties
+casProperties=casServerLoginUrl,serverName,centralServer,casServerName,uriFilterPattern,uriExclusionFilterPattern,authenticateOnlyIfLoggedInFilterPattern,casServerLoginUrlPrefix,gateway,casServerUrlPrefix,contextPath
+uriFilterPattern=/admin/*,/alaAdmin/*,/download/*
+uriExclusionFilterPattern=/occurrences/shapeUpload,/images.*,/css.*,/js.*,.*json,/help/.*
+authenticateOnlyIfLoggedInFilterPattern=/occurrences/*,/explore/your-area,/query,/proxy/download/*
+casServerName=http://auth.la-flanders.org
+casServerUrlPrefix=http://auth.la-flanders.org/cas
+casServerLoginUrl=http://auth.la-flanders.org/cas/login
+casServerLogoutUrl=http://auth.la-flanders.org/cas/logout
+
+# Data Quality settings
+dataquality.enabled=false
+dataquality.baseUrl=https://dataquality.ala.org.au/
+dataquality.learnmore_link=
+dataquality.apiKey=28f72d39-6c8b-44fc-8184-cd81f6ea518a
+dataquality.warningOn=false
+dataquality.disableAllFiltersByDefault=false
+dataquality.expandFiltersByDefault=true
+
+# App settings
+organisation.baseUrl=http://la-flanders.org
+
+# skin
+skin.homeUrl = http://la-flanders.org
+skin.layout=ala
+skin.favicon=https://raw.githubusercontent.com/living-atlases/artwork/master/favicon.ico
+skin.fluidLayout=True
+skin.orgNameLong=Vlaams Biodiversiteitsportaal
+skin.orgNameShort=LA Flanders
+skin.attribution=
+skin.useAlaBie=true
+skin.useAlaSpatialPortal=true
+skin.useAlaImageService=true
+skin.taxaLinks.baseUrl=http://species.la-flanders.org/species/
+skin.dataQualityLink.show=false
+skin.dataQualityLink.url=
+skin.dataQualityLink.text=not set
+skin.exploreUrl = https://www.ala.org.au/explore-by-location/
+supportEmail=support@la-flanders.org
+
+images.images.metadataUrl=
+bie.baseUrl=http://species.la-flanders.org
+bieService.baseUrl=http://species-ws.la-flanders.org
+bie.searchPath=/search
+biocache.apiKey=ae1cc2a8-0509-4792-8e62-ded96510d5cc
+biocache.queryContext=-_nest_parent_:*
+biocache.baseUrl=http://records-ws.la-flanders.org
+biocache.url=http://records.la-flanders.org
+biocacheServiceUrl=http://records-ws.la-flanders.org
+# bicoacheServicesUrl maintained for backwards compatibility with < biocache_hubs 5.0
+biocacheServicesUrl=http://records-ws.la-flanders.org
+biocache.downloads.extra=dataResourceUid,dataResourceName.p
+biocache.ajax.useProxy=false
+biocache.groupedFacetsUrl=file:///data/ala-hub/config/grouped_facets_default.json
+biocache.indexedFieldsUrl=http://records-ws.la-flanders.org/index/fields
+collectory.baseUrl=http://collections.la-flanders.org
+collections.baseUrl=http://collections.la-flanders.org
+collectory.resources=http://collections.la-flanders.org/public/resources.json
+spatial.baseUrl=http://spatial.la-flanders.org
+spatial.baseURL=http://spatial.la-flanders.org
+layersservice.baseUrl=http://spatial.la-flanders.org/ws
+layersservice.url=http://spatial.la-flanders.org/ws
+# userDetails.url is not used by the hubs but by the ala-auth plugin
+userDetails.url=http://auth.la-flanders.org/userdetails/
+# userdetails.baseUrl is used by the hubs
+userdetails.baseUrl=http://auth.la-flanders.org
+doiService.baseUrl=https://doi.ala.org.au
+logger.baseUrl=http://logger.la-flanders.org/service
+loggerURL=http://logger.la-flanders.org/service
+sightings.baseUrl=
+
+# Image viewer
+image.baseUrl=http://images.la-flanders.org
+images.baseUrl=http://images.la-flanders.org
+images.viewerUrl=http://images.la-flanders.org/image/viewer?imageId=
+images.metadataUrl=http://images.la-flanders.org/image/details?imageId=
+alwaysshow.imagetab=true
+
+#spatial.params=&dynamic=true&ws=http%3A%2F%2Fsandbox.ala.org.au%2Fhubs-webapp&bs=http%3A%2F%2Fsandbox.ala.org.au%2Fbiocache-service
+spatial.params=
+
+# ROLE for access to sensitive records
+clubRoleForHub=ROLE_ADMIN
+
+# URL for data quality checks
+dataQualityChecksUrl=https://docs.google.com/spreadsheet/pub?key=0AjNtzhUIIHeNdHJOYk1SYWE4dU1BMWZmb2hiTjlYQlE&single=true&gid=0&output=csv
+
+# Default view for search results
+defaultListView=
+
+# dwc values to exclude from occurrence record pages
+dwc.exclude=dataHubUid,dataProviderUid,institutionUid,year,month,day,left,right,provenance,taxonID,preferredFlag,outlierForLayers,speciesGroups,associatedMedia,images,userQualityAssertion,speciesHabitats,duplicationType,taxonomicIssues,subspeciesID,nameMatchMetric,sounds
+
+# Explore your area defaults
+exploreYourArea.lat=16.942
+exploreYourArea.lng=1.261
+exploreYourArea.location=Australia
+
+# Table display
+table.displayDynamicProperties=false
+
+# Facet configuration
+facets.limit=100
+facets.customOrder=
+facets.defaultColourBy=
+facets.includeDynamicFacets=false
+facets.exclude=
+facets.hide=
+facets.include=
+# facets cached affects the advanced search. Please include indexed fields that are used in drop downs
+facets.cached=species_group,species_subgroup,state,country,institution_uid,collection_uid,data_resource_uid
+facets.defaultSelected=basis_of_record,taxon_name,collection_uid,data_resource_uid,year,species_group
+facets.max=32
+
+# Mapping
+map.cloudmade.key=BC9A493B41014CAABB98F0471D759707
+map.defaultLatitude=16.942
+map.defaultLongitude=1.261
+map.defaultZoom=5
+map.defaultFacetMapColourBy=
+map.pointColour=df4a21
+map.zoomOutsideScopedRegion=true
+map.height=600
+geocode.region=AU
+
+map.minimal.url=https://cartodb-basemaps-{s}.global.ssl.fastly.net/light_all/{z}/{x}/{y}.png
+map.overlay.url=http://spatial.la-flanders.org/geoserver/gwc/service/wms
+
+mapdownloads.baseLayers.states.name=aus1
+mapdownloads.baseLayers.states.i18nCode=baselayer.states
+mapdownloads.baseLayers.states.displayName=States & territories
+
+# Google API key
+google.apikey=get-a-google-api-key
+
+# authorised roles
+authorise.roles=ROLE_ADMIN,ROLE_COLLECTION_ADMIN
+
+# alerts and myannotation settings
+alerts.myannotation.enabled = false
+alerts.baseUrl=
+alerts.apiKey=a5c2e4d1-324c-4bc2-8770-2a2aa092df49
+
+# misc
+speciesList.baseURL=http://lists.la-flanders.org
+speciesListToolUrl=http://lists.la-flanders.org/speciesListItem/list/
+advancedTaxaField=taxa
+
+# australia specific list paths
+stateConservationListPath.NewSouthWales=/speciesListItem/list/dr650
+stateConservationListPath.AustralianCapitalTerritory=/speciesListItem/list/dr649
+stateConservationListPath.Queensland=/speciesListItem/list/dr652
+stateConservationListPath.Victoria=/speciesListItem/list/dr655
+stateConservationListPath.WesternAustralia=/speciesListItem/list/dr2201
+stateConservationListPath.SouthAustralia=/speciesListItem/list/dr653
+stateConservationListPath.NorthernTerritory=/speciesListItem/list/dr651
+stateConservationListPath.Tasmania=/speciesListItem/list/dr654
+
+# Header and footer
+headerAndFooter.baseURL=http://branding.la-flanders.org
+headerAndFooter.version=2
+
+ala.baseURL=http://la-flanders.org
+bie.baseURL=http://species.la-flanders.org
+privacyPolicy=
+
+# Only used by the mdba hub
+ecodata.baseURL=
+pdfgen.baseURL=http://pdfgen.ala.org.au
+webservice.apiKey=ae1cc2a8-0509-4792-8e62-ded96510d5cc
+mdba.basinChampions=https://biocollect.ala.org.au/mdba/project/index/4d15b4df-c05b-41bd-ac5b-8a65c9e37d17
+mdba.regions=http://mdba-regions.ala.org.au/
+
+#Used by Preferred Species
+bieApiKey=5bd6d4fc-3f1c-4fa2-903a-7ec771c02999
+speciesList.preferredSpeciesListDruid=dr4778
+speciesList.preferredListName=ALA Preferred Species Images
+allowedImageEditingRoles=ROLE_ADMIN
+
+# mdba config
+specieslist.baseUrl=http://lists.la-flanders.org/ws
+
+# Downloads
+useDownloadPlugin=true
+downloads.indexedDownloadUrl=http://records-ws.la-flanders.org/occurrences/offline/download
+downloads.checklistDownloadUrl=http://records-ws.la-flanders.org/occurrences/facets/download
+downloads.indexedFieldsUrl=http://records-ws.la-flanders.org/index/fields
+downloads.fieldguideDownloadUrl=
+fieldguide.url=
+downloads.staticDownloadsUrl=
+downloads.termsOfUseUrl=
+downloads.defaultDownloadFormat=dwc
+downloads.dwcExtraFields=data_resource_uid
+downloads.legacy.defaultFields=id,data_resource_uid,data_resource,license,catalogue_number,taxon_concept_lsid,raw_taxon_name,raw_common_name,taxon_name,rank,common_name,kingdom,phylum,class,order,family,genus,species,subspecies,institution_code,collection_code,locality,raw_latitude,raw_longitude,raw_datum,latitude,longitude,datum,coordinate_precision,coordinate_uncertainty,country,state,cl959,min_elevation_d,max_elevation_d,min_depth_d,max_depth_d,individual_count,recorded_by,year,month,day,verbatim_event_date,basis_of_record,raw_basis_of_record,sex,preparations,information_withheld,data_generalizations,outlier_layer,taxonomic_kosher,geospatial_kosher"
+
+downloads.customSections.misc=qualityAssertions,miscellaneousFields
+
+# Maximum download limit without 'largeDownloadRole' permission
+maxDownloadRecords=
+
+# The CAS role to use for large downloads
+largeDownloadRole=ROLE_LARGE_DOWNLOAD
+
+userCharts=false
+
+doi.mintDoi=false
+endpoints.enabled=false
+
+# oidc related
+security.cas.enabled=true
+security.oidc.enabled=true
+security.oidc.clientId=ala-hub
+security.oidc.secret=ala-hub-super-secret
+security.oidc.discoveryUri=http://auth.la-flanders.org/cas/oidc/.well-known
+security.jwt.discoveryUri=http://auth.la-flanders.org/cas/oidc/.well-known
+security.jwt.clientId=
+
+# cognito specific configs
+
+
+#websevice jwt
+webservice.jwt=false
+webservice.jwt-scopes=
+webservice.client-id=
+webservice.client-secret=
+userDetails.url=http://auth.la-flanders.org/userdetails/
+
+info.app.description=Vlaams Biodiversiteitsportaal
+
+#events cofig
+events.enabled = false
+events.graphql = https://api.la-flanders.org/event/graphql
+events.eventUrl = https://events.la-flanders.org/?view=EVENTS&eventHierarchy=
+userdetails.url=http://auth.la-flanders.org/userdetails/
+userdetails.web.url=http://auth.la-flanders.org/userdetails/
+userdetails.api.url=http://auth.la-flanders.org/userdetails/
+
+filetype.shapefile.hidden=false
+
+
+
+management.endpoint.health.enabled=true
+management.endpoints.web.exposure.include=health

config/ala-hub/ala-hub-config.yml

@@ -0,0 +1,7 @@
+security:
+  oidc:
+    enabled: true # Cannot disable oidc :(
+    discoveryUri: http://auth.la-flanders.org/cas/oidc/.well-known
+    scope: openid,profile,email,ala,roles, user_defined
+    client-id: "ala_hub"
+    secret: "ala_hub-oidc-super-secret"

config/ala-hub/charts.json

@@ -0,0 +1,52 @@
+{ "biocache" : {
+  "license" : {
+    "title": "By licence",
+    "chartType": "doughnut",
+    "emptyValueMsg": "Licence not specified",
+    "hideEmptyValues" : true,
+    "includeOther" : "false"
+  },
+    "month" : {
+      "title": "By month",
+      "chartType": "bar",
+      "emptyValueMsg": "Month not specified",
+      "hideEmptyValues" : true,
+      "includeOther" : "false"
+    },
+    "decade" : {
+      "title": "By decade",
+      "chartType": "bar",
+      "emptyValueMsg": "Year not specified",
+      "hideEmptyValues" : true,
+      "includeOther" : "false"
+    },
+    "genus" : {
+        "title": "By genus",
+        "chartType": "doughnut",
+        "emptyValueMsg": "Genus not specified",
+        "hideEmptyValues" : true,
+        "includeOther" : "false"
+    },
+    "family" : {
+      "title": "By family",
+      "chartType": "doughnut",
+      "emptyValueMsg": "Family not specified",
+      "hideEmptyValues" : true,
+      "includeOther" : "false"
+    },
+    "assertions": {
+      "title":"By data assertion",
+      "chartType": "horizontal-bar",
+      "emptyValueMsg":"Assertion not specified",
+      "hideEmptyValues": true,
+      "includeOther" : "false",
+      "growToFit": true
+    },
+    "type_status":{
+	"title":"By type status (as % of all type specimens)",
+	"chartType": "doughnut",
+	"emptyValueMsg": "Type status not specified",
+	"hideEmptyValues": true,
+      "includeOther" : "false"
+    }
+}}