Closes #84 implement pharmaverseadam::adlb for lab test suite
#243
GitHub Actions / Unit Tests Summary
failed
Jan 10, 2024 in 0s
3 errors, 16 skipped, 234 pass in 5m 57s
1 files 113 suites 5m 57s ⏱️
253 tests 234 ✅ 16 💤 0 ❌ 3 🔥
502 runs 250 ✅ 249 💤 0 ❌ 3 🔥
Results for commit 1fae75c.
Annotations
Check failure on line 0 in listing_pkpl01
github-actions / Unit Tests Summary
PKPL01_listing_is_produced_correctly (listing_pkpl01) with error
scda.test.Rcheck/tests/testthat/junit-result.xml [took 0s]
Raw output
<dplyr:::mutate_error/rlang_error/error/condition> ('test-listing_pkpl01.R:13:3')
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., TRT01A = TRT01A.x)`: i In argument: `TRT01A = TRT01A.x`.
Caused by error:
! object 'TRT01A.x' not found
Backtrace:
x
1. +-... %>% ... at test-listing_pkpl01.R:13:3
2. +-tidyr::pivot_wider(...)
3. +-base::unique(.)
4. +-dplyr::select(., TRT01A, USUBJID, AVISIT, PARAM, AVAL)
5. +-dplyr::mutate(., TRT01A = TRT01A.x)
6. +-dplyr:::mutate.data.frame(., TRT01A = TRT01A.x)
7. | \-dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
8. | +-base::withCallingHandlers(...)
9. | \-dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
10. | \-mask$eval_all_mutate(quo)
11. | \-dplyr (local) eval()
12. \-base::.handleSimpleError(...)
13. \-dplyr (local) h(simpleError(msg, call))
14. \-rlang::abort(message, class = error_class, parent = parent, call = error_call)
Check failure on line 0 in table_pkpt02
github-actions / Unit Tests Summary
PKPT02_is_produced_correctly_for_Drug_X (table_pkpt02) with error
scda.test.Rcheck/tests/testthat/junit-result.xml [took 0s]
Raw output
Error in ``$<-.data.frame`(`*tmp*`, "TLG_ORDER", value = numeric(0))`: replacement has 0 rows, data has 2352 ('test-table_pkpt02.R:34:3')
Error in ``$<-.data.frame`(`*tmp*`, "TLG_ORDER", value = numeric(0))`: replacement has 0 rows, data has 2352
Backtrace:
x
1. +-... %>% ... at test-table_pkpt02.R:34:3
2. +-dplyr::mutate(...)
3. \-tern::h_pkparam_sort(.)
4. +-base::`$<-`(`*tmp*`, "TLG_ORDER", value = `<dbl>`)
5. \-base::`$<-.data.frame`(`*tmp*`, "TLG_ORDER", value = `<dbl>`)
Check failure on line 0 in table_pkpt03
github-actions / Unit Tests Summary
PKPT03_Drug_X_is_produced_correctly (table_pkpt03) with error
scda.test.Rcheck/tests/testthat/junit-result.xml [took 0s]
Raw output
Error in ``$<-.data.frame`(`*tmp*`, "TLG_ORDER", value = numeric(0))`: replacement has 0 rows, data has 2352 ('test-table_pkpt03.R:58:3')
Error in ``$<-.data.frame`(`*tmp*`, "TLG_ORDER", value = numeric(0))`: replacement has 0 rows, data has 2352
Backtrace:
x
1. +-... %>% ... at test-table_pkpt03.R:58:3
2. +-dplyr::mutate(...)
3. \-tern::h_pkparam_sort(.)
4. +-base::`$<-`(`*tmp*`, "TLG_ORDER", value = `<dbl>`)
5. \-base::`$<-.data.frame`(`*tmp*`, "TLG_ORDER", value = `<dbl>`)
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