GitHub - intron-prediction-capstone/intron-utility: U12-type intron prediction and file parsing utility in modern C++

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U12-type intron prediction and file parsing utility in modern C++

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Name		Name	Last commit message	Last commit date
Latest commit History 104 Commits
inputs		inputs
lib		lib
.gitignore		.gitignore
.gitmodules		.gitmodules
Makefile		Makefile
README		README
USAGE		USAGE
compile		compile
getcoords.cpp		getcoords.cpp
introns.h		introns.h
main.cpp		main.cpp
parse-fasta-from-gtf-dump.sh		parse-fasta-from-gtf-dump.sh
score.cpp		score.cpp

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DESCRIPTION

  This program is meant to find and predict U12 introns.

CLONING

  Make sure to use --recursive when cloning the git repository; otherwise you
  will need to manually initialize the submodules in the lib directory.

USAGE

  See the USAGE file for more information on how to use this program.

BUILDING

  This program requires a C++17-compatible compiler, and if you have GNU Make
  installed, you can use the Makefile to compile it.

LIBRARIES

  This program uses the following external dependencies (represented as
  submodules in this repository):
    - gtf-cpp for GTF parsing (github/willeccles/gtf-cpp)
    - fasta-cpp for FASTA parsing (github/willeccles/gtf-cpp)
    - pdqsort to sort arrays quickly without relying on std::sort (github/orlp/pdqsort)