Better patches generation on deep learning segmentation (#846) #23
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| name: generate bundles | |
| on: [push] | |
| jobs: | |
| build-win: | |
| name: build windows packages | |
| runs-on: windows-latest | |
| strategy: | |
| matrix: | |
| architecture: ['x64'] | |
| ai_ready: [0, 1] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: true | |
| - name: Put current date into a variable | |
| run: | | |
| $DATE=& Get-Date -format yyyy-MM-dd | |
| echo "DATE=$DATE" >> $env:GITHUB_ENV | |
| - name: Put current commit hash in a variable | |
| run: | | |
| $COMMIT=$(git rev-parse HEAD) | |
| echo "COMMIT=$COMMIT" >> $env:GITHUB_ENV | |
| - name: Setup VC++ 2022 (17.0) | |
| uses: ilammy/msvc-dev-cmd@v1.13.0 | |
| with: | |
| vsversion: '17.0' | |
| arch: ${{ matrix.architecture }} | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.11.2' | |
| cache: 'pip' | |
| - name: Upgrade pip and enable wheel support | |
| run: python -m pip install --upgrade pip setuptools wheel | |
| - name: Install InVesalius requirements | |
| run: pip install -r requirements.txt | |
| - name: Install Pytorch + Cuda 11.8 (only ai-ready build) | |
| if: ${{ matrix.ai_ready == 1}} | |
| run: pip install torch==2.3.1+cu118 --extra-index-url https://download.pytorch.org/whl/cu118 | |
| - name: Compile InVesalius Cython parts | |
| run: | | |
| python3 setup.py build_ext --inplace | |
| python3 setup.py build_plugins | |
| - name: Insert version and commit hash into dialog.py | |
| run: python3 bundle_tools/win/insert_version_date.py ./invesalius/gui/dialogs.py ${{ env.DATE }} ${{ env.COMMIT }} nightly | |
| - uses: suisei-cn/actions-download-file@818d6b7dc8fe73f2f924b6241f2b1134ca1377d9 | |
| id: pyinstaller | |
| name: Download pyinstaller | |
| with: | |
| url: "https://github.com/pyinstaller/pyinstaller/archive/refs/tags/v6.9.0.zip" | |
| target: ./pyinstaller/ | |
| - name: Extract pyinstaller file | |
| uses: ihiroky/extract-action@v1 | |
| with: | |
| file_path: ./pyinstaller/v6.9.0.zip | |
| extract_dir: ./pyinstaller/ | |
| - name: Compile pyinstaller bootloader | |
| run: | | |
| cd ./pyinstaller/pyinstaller-6.9.0/bootloader/ | |
| python3 ./waf distclean all | |
| cd .. | |
| pip install . | |
| - name: Download mandible ai weight | |
| if: ${{ matrix.ai_ready == 1 }} | |
| uses: suisei-cn/actions-download-file@818d6b7dc8fe73f2f924b6241f2b1134ca1377d9 | |
| with: | |
| url: "https://raw.githubusercontent.com/invesalius/weights/main/mandible_ct/mandible_jit_ct.pt" | |
| target: ./ai/mandible_jit_ct/ | |
| - name: Download cranioplasty binary ai weight | |
| if: ${{ matrix.ai_ready == 1 }} | |
| uses: suisei-cn/actions-download-file@818d6b7dc8fe73f2f924b6241f2b1134ca1377d9 | |
| with: | |
| url: "https://raw.githubusercontent.com/invesalius/weights/main/cranioplasty_jit_ct_binary/cranioplasty_jit_ct_binary.pt" | |
| target: ./ai/cranioplasty_jit_ct_binary/ | |
| - name: Download cranioplasty gray ai weight | |
| if: ${{ matrix.ai_ready == 1 }} | |
| uses: suisei-cn/actions-download-file@818d6b7dc8fe73f2f924b6241f2b1134ca1377d9 | |
| with: | |
| url: "https://raw.githubusercontent.com/invesalius/weights/main/cranioplasty_jit_ct_gray/cranioplasty_jit_ct_gray.pt" | |
| target: ./ai/cranioplasty_jit_ct_gray/ | |
| - name: Download trachea ai weight | |
| if: ${{ matrix.ai_ready == 1 }} | |
| uses: suisei-cn/actions-download-file@818d6b7dc8fe73f2f924b6241f2b1134ca1377d9 | |
| with: | |
| url: "https://github.com/tfmoraes/deep_trachea_torch/releases/download/v1.0/weights.pt" | |
| target: ./ai/trachea_ct/ | |
| - name: Fix trachea name ai weight | |
| if: ${{ matrix.ai_ready == 1 }} | |
| run: | | |
| move ./ai/trachea_ct/weights.pt ./ai/trachea_ct/trachea_ct.pt | |
| - name: Download brain ai weight | |
| if: ${{ matrix.ai_ready == 1 }} | |
| uses: suisei-cn/actions-download-file@818d6b7dc8fe73f2f924b6241f2b1134ca1377d9 | |
| with: | |
| url: "https://github.com/tfmoraes/deepbrain_torch/releases/download/v1.1.0/weights.pt" | |
| target: ./ai/brain_mri_t1/ | |
| - name: Fix brain name ai weight | |
| if: ${{ matrix.ai_ready == 1 }} | |
| run: | | |
| move ./ai/brain_mri_t1/weights.pt ./ai/brain_mri_t1/brain_mri_t1.pt | |
| - name: Generate InVesalius .exe file | |
| run: | | |
| cp ./bundle_tools/win/app.spec ./ | |
| pyinstaller app.spec --clean --noconfirm | |
| mkdir installer | |
| - name: Generate InVesalius installer - win64 ai-ready build | |
| if: ${{ matrix.ai_ready == 1 }} | |
| uses: Minionguyjpro/Inno-Setup-Action@v1.2.2 | |
| with: | |
| path: ./bundle_tools/win/generate_installer.iss | |
| options: /F"invesalius-3.1_nightly_ai-ready_win64" | |
| - name: Generate InVesalius installer - win64 normal build | |
| if: ${{ matrix.ai_ready == 0}} | |
| uses: Minionguyjpro/Inno-Setup-Action@v1.2.2 | |
| with: | |
| path: ./bundle_tools/win/generate_installer.iss | |
| options: /F"invesalius-3.1_nightly_win64" | |
| - name: Show files | |
| run: | | |
| cd ./installer | |
| dir | |
| - name: Upload artifact of package normal file | |
| if: ${{ matrix.ai_ready == 0}} | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| overwrite: true | |
| name: invesalius_package_exe_normal | |
| retention-days: 2 | |
| path: ./installer/*.exe | |
| - name: Upload artifact of package ai-ready file | |
| if: ${{ matrix.ai_ready == 1}} | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| overwrite: true | |
| name: invesalius_package_exe_ai-ready | |
| retention-days: 2 | |
| path: ./installer/*.exe | |
| publish_packages: | |
| name: publish packages | |
| needs: build-win | |
| runs-on: windows-latest | |
| steps: | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| name: invesalius_package_exe_normal | |
| path: ./ | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| name: invesalius_package_exe_ai-ready | |
| path: ./ | |
| - name: Message | |
| run: | | |
| dir | |
| - name: Update Nightly Release | |
| uses: andelf/nightly-release@main | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| with: | |
| tag_name: nightly | |
| name: 'Nightly' | |
| draft: false | |
| prerelease: ${{ (github.event_name == 'workflow_dispatch' && github.event.inputs.is-pre-release) || (github.event_name == 'schedule')}} | |
| body: | | |
| This is a nightly release InVesalius. | |
| It's unstable compared to the official releases, **use it with caution**! | |
| files: | | |
| ./invesalius-3.1_nightly_ai-ready_win64.exe | |
| ./invesalius-3.1_nightly_win64.exe |