Merge pull request #270 from ioos/dependabot/github_actions/dot-githu… #58
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| name: renderbook | |
| on: | |
| push: | |
| branches: | |
| - main | |
| paths: | |
| - '.github/workflows/deploy_bookdown.yml' | |
| - 'bio-data-guide/**' | |
| workflow_dispatch: | |
| jobs: | |
| bookdown: | |
| name: Render-Book | |
| runs-on: macOS-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: 'recursive' | |
| - uses: r-lib/actions/setup-r@v1 | |
| with: | |
| r-version: '4.1.1' | |
| - uses: r-lib/actions/setup-pandoc@v1 | |
| with: | |
| pandoc-version: '2.14.1' | |
| - name: Install packages | |
| run: Rscript -e ' | |
| install.packages(c("librarian", "rgdal", "rmarkdown", "vroom", "xfun", "tinytex", "tidync"), type = "binary"); | |
| librarian::shelf(bookdown, dm, here, lubridate, rmarkdown, tidyverse, worms); | |
| remotes::install_github("iobis/obistools", upgrade="never"); | |
| tinytex::install_tinytex()' | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Move headers one level down in edna example | |
| run: | | |
| sed -i'' -e 's/# /## /g' datasets/dataset-edna/README.md | |
| - name: Render Html Book | |
| run: Rscript -e ' | |
| setwd("bio-data-guide/"); | |
| options(knitr.duplicate.label = "allow"); | |
| bookdown::render_book("index.Rmd");' | |
| - name: Render epub book | |
| run: Rscript -e ' | |
| setwd("bio-data-guide/"); | |
| options(knitr.duplicate.label = "allow"); | |
| bookdown::render_book("index.Rmd", "bookdown::epub_book")' | |
| - name: remove binder image line from edna example for pdf | |
| run: | | |
| sed -i'' -e '/Binder/d' datasets/dataset-edna/README.md; | |
| sed -i'' -e 's,!\[\](https://contrib.rocks/image?repo=ioos/bio_data_guide),,g' bio-data-guide/index.Rmd | |
| - name: Render pdf book | |
| run: Rscript -e ' | |
| setwd("bio-data-guide/"); | |
| options(knitr.duplicate.label = "allow"); | |
| bookdown::render_book("index.Rmd", "bookdown::pdf_book")' | |
| - uses: actions/upload-artifact@v2 | |
| with: | |
| name: _book | |
| path: 'bio-data-guide/docs' # see _bookdown.yml: output_dir | |
| # Need to first create an empty gh-pages branch | |
| # see https://pkgdown.r-lib.org/reference/deploy_site_github.html | |
| # and also add secrets for a GH_PAT and EMAIL to the repository | |
| # gh-action from Cecilapp/GitHub-Pages-deploy | |
| checkout-and-deploy: | |
| runs-on: ubuntu-latest | |
| needs: bookdown | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@master | |
| - name: Download artifact | |
| uses: actions/download-artifact@v4.1.7 | |
| with: | |
| # Artifact name | |
| name: _book # optional | |
| # Destination path | |
| path: 'bio-data-guide/docs' # see _bookdown.yml: output_dir | |
| - name: Deploy to GitHub Pages | |
| uses: Cecilapp/GitHub-Pages-deploy@v3 | |
| with: | |
| build_dir: 'bio-data-guide/docs' # see _bookdown.yml: output_dir | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |