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Merge pull request #269 from laurabrenskelle/main
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Update atn_satellite_telemetry_netCDF2DwC.Rmd
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@MathewBiddle
MathewBiddle authored Jun 12, 2024
2 parents d0db578 + 12f1bcd commit ccd0371
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8 changes: 8 additions & 0 deletions datasets/atn_satellite_telemetry/atn_satellite_telemetry_netCDF2DwC.Rmd
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Expand Up @@ -341,7 +341,15 @@ occurrencedf_dec <- occurrencedf_dec %>%
names(occurrencedf_dec)
```
#### Add NCEI URL to references

For full transparency, we will add the Darwin Core term references to provide the URL to the NCEI landing page, where the full dataset can be accessed by curious users.

```{r}
occurrencedf_dec$references <- "https://www.ncei.noaa.gov/archive/accession/0282699"
occurrencedf_dec
```
##### Write decimated occurrence file as csv

```{r}
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36 changes: 18 additions & 18 deletions datasets/atn_satellite_telemetry/data/dwc/atn_45866_occurrence.csv
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@@ -1,18 +1,18 @@
"eventDate","decimalLatitude","decimalLongitude","basisOfRecord","kingdom","taxonRank","occurrenceStatus","sex","lifeStage","scientificName","scientificNameID","minimumDepthInMeters","maximumDepthInMeters","organismID","occurrenceID","geodeticDatum","eventID","coordinateUncertaintyInMeters","dataGeneralizations"
"2009-09-23T00:00:00Z",34.03,-118.56,"HumanObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838",0,0,"105838_great_white_shark","2009-09-23T00:00:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-09-23T00:00:00Z",0,""
"2009-09-25T11:09:00Z",34.024,-118.556,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838",0,0,"105838_great_white_shark","2009-09-25T11:09:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-09-25T11:09:00Z",1500,"first of 2 records"
"2009-09-27T17:58:00Z",34.033,-118.547,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838",0,0,"105838_great_white_shark","2009-09-27T17:58:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-09-27T17:58:00Z",1500,""
"2009-10-08T20:24:00Z",34.038,-118.581,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838",0,0,"105838_great_white_shark","2009-10-08T20:24:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-10-08T20:24:00Z",500,""
"2009-10-15T11:05:00Z",33.995,-118.678,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838",0,0,"105838_great_white_shark","2009-10-15T11:05:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-10-15T11:05:00Z",10000,""
"2009-10-17T06:11:00Z",34.037,-118.545,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838",0,0,"105838_great_white_shark","2009-10-17T06:11:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-10-17T06:11:00Z",10000,""
"2009-10-17T09:00:00Z",34.026,-118.534,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838",0,0,"105838_great_white_shark","2009-10-17T09:00:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-10-17T09:00:00Z",500,""
"2009-10-17T10:38:00Z",34.027,-118.545,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838",0,0,"105838_great_white_shark","2009-10-17T10:38:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-10-17T10:38:00Z",250,""
"2009-10-18T08:48:00Z",34.039,-118.548,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838",0,0,"105838_great_white_shark","2009-10-18T08:48:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-10-18T08:48:00Z",1500,""
"2009-10-18T10:26:00Z",34.031,-118.541,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838",0,0,"105838_great_white_shark","2009-10-18T10:26:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-10-18T10:26:00Z",500,""
"2009-10-18T11:15:00Z",34.041,-118.535,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838",0,0,"105838_great_white_shark","2009-10-18T11:15:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-10-18T11:15:00Z",10000,""
"2009-10-23T23:52:00Z",33.999,-118.612,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838",0,0,"105838_great_white_shark","2009-10-23T23:52:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-10-23T23:52:00Z",500,""
"2009-10-24T00:06:00Z",34.002,-118.604,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838",0,0,"105838_great_white_shark","2009-10-24T00:06:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-10-24T00:06:00Z",10000,""
"2009-10-26T10:53:00Z",34.022,-118.537,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838",0,0,"105838_great_white_shark","2009-10-26T10:53:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-10-26T10:53:00Z",250,""
"2009-10-27T16:21:00Z",34.01,-118.524,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838",0,0,"105838_great_white_shark","2009-10-27T16:21:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-10-27T16:21:00Z",1500,"first of 2 records"
"2009-10-29T11:53:00Z",33.989,-118.504,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838",0,0,"105838_great_white_shark","2009-10-29T11:53:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-10-29T11:53:00Z",500,""
"2009-10-31T21:15:00Z",34.045,-118.53,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838",0,0,"105838_great_white_shark","2009-10-31T21:15:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-10-31T21:15:00Z",10000,""
"eventDate","decimalLatitude","decimalLongitude","basisOfRecord","kingdom","taxonRank","occurrenceStatus","sex","lifeStage","scientificName","scientificNameID","minimumDepthInMeters","maximumDepthInMeters","organismID","occurrenceID","geodeticDatum","eventID","coordinateUncertaintyInMeters","dataGeneralizations","references"
"2009-09-23T00:00:00Z",34.03,-118.56,"HumanObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838",0,0,"105838_great_white_shark","2009-09-23T00:00:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-09-23T00:00:00Z",0,"","https://www.ncei.noaa.gov/archive/accession/0282699"
"2009-09-25T11:09:00Z",34.024,-118.556,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838",0,0,"105838_great_white_shark","2009-09-25T11:09:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-09-25T11:09:00Z",1500,"first of 2 records","https://www.ncei.noaa.gov/archive/accession/0282699"
"2009-09-27T17:58:00Z",34.033,-118.547,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838",0,0,"105838_great_white_shark","2009-09-27T17:58:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-09-27T17:58:00Z",1500,"","https://www.ncei.noaa.gov/archive/accession/0282699"
"2009-10-08T20:24:00Z",34.038,-118.581,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838",0,0,"105838_great_white_shark","2009-10-08T20:24:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-10-08T20:24:00Z",500,"","https://www.ncei.noaa.gov/archive/accession/0282699"
"2009-10-15T11:05:00Z",33.995,-118.678,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838",0,0,"105838_great_white_shark","2009-10-15T11:05:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-10-15T11:05:00Z",10000,"","https://www.ncei.noaa.gov/archive/accession/0282699"
"2009-10-17T06:11:00Z",34.037,-118.545,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838",0,0,"105838_great_white_shark","2009-10-17T06:11:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-10-17T06:11:00Z",10000,"","https://www.ncei.noaa.gov/archive/accession/0282699"
"2009-10-17T09:00:00Z",34.026,-118.534,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838",0,0,"105838_great_white_shark","2009-10-17T09:00:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-10-17T09:00:00Z",500,"","https://www.ncei.noaa.gov/archive/accession/0282699"
"2009-10-17T10:38:00Z",34.027,-118.545,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838",0,0,"105838_great_white_shark","2009-10-17T10:38:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-10-17T10:38:00Z",250,"","https://www.ncei.noaa.gov/archive/accession/0282699"
"2009-10-18T08:48:00Z",34.039,-118.548,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838",0,0,"105838_great_white_shark","2009-10-18T08:48:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-10-18T08:48:00Z",1500,"","https://www.ncei.noaa.gov/archive/accession/0282699"
"2009-10-18T10:26:00Z",34.031,-118.541,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838",0,0,"105838_great_white_shark","2009-10-18T10:26:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-10-18T10:26:00Z",500,"","https://www.ncei.noaa.gov/archive/accession/0282699"
"2009-10-18T11:15:00Z",34.041,-118.535,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838",0,0,"105838_great_white_shark","2009-10-18T11:15:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-10-18T11:15:00Z",10000,"","https://www.ncei.noaa.gov/archive/accession/0282699"
"2009-10-23T23:52:00Z",33.999,-118.612,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838",0,0,"105838_great_white_shark","2009-10-23T23:52:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-10-23T23:52:00Z",500,"","https://www.ncei.noaa.gov/archive/accession/0282699"
"2009-10-24T00:06:00Z",34.002,-118.604,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838",0,0,"105838_great_white_shark","2009-10-24T00:06:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-10-24T00:06:00Z",10000,"","https://www.ncei.noaa.gov/archive/accession/0282699"
"2009-10-26T10:53:00Z",34.022,-118.537,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838",0,0,"105838_great_white_shark","2009-10-26T10:53:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-10-26T10:53:00Z",250,"","https://www.ncei.noaa.gov/archive/accession/0282699"
"2009-10-27T16:21:00Z",34.01,-118.524,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838",0,0,"105838_great_white_shark","2009-10-27T16:21:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-10-27T16:21:00Z",1500,"first of 2 records","https://www.ncei.noaa.gov/archive/accession/0282699"
"2009-10-29T11:53:00Z",33.989,-118.504,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838",0,0,"105838_great_white_shark","2009-10-29T11:53:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-10-29T11:53:00Z",500,"","https://www.ncei.noaa.gov/archive/accession/0282699"
"2009-10-31T21:15:00Z",34.045,-118.53,"MachineObservation","Animalia","Species","present","male","juvenile","Carcharodon carcharias","urn:lsid:marinespecies.org:taxname:105838",0,0,"105838_great_white_shark","2009-10-31T21:15:00Z_0_great_white_shark","EPSG:4326","great_white shark_2009-10-31T21:15:00Z",10000,"","https://www.ncei.noaa.gov/archive/accession/0282699"

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