CI #287

Workflow file for this run

	name: CI

	on:
	push:
	# Build on tags that look like releases
	tags:
	- v*
	# Build when main or testing is pushed to
	branches:
	- main
	- testing
	pull_request:
	# Build when a pull request targets main
	branches:
	- main

	concurrency:
	group: ${{ github.workflow }}-${{ github.ref }}
	cancel-in-progress: true

	jobs:
	# matlab-test:
	# name: Run MATLAB Test Script
	# runs-on: ubuntu-latest
	# env:
	# LD_PRELOAD: /usr/lib/x86_64-linux-gnu/libstdc++.so.6
	# CANTERA_ROOT: /home/runner/work/cantera/cantera
	# CANTERA_DATA: /home/runner/work/cantera/cantera/data
	# steps:
	# - uses: actions/checkout@v3
	# name: Checkout the repository
	# with:
	# submodules: recursive
	# - name: Setup Python
	# uses: actions/setup-python@v4
	# with:
	# python-version: '3.10'
	# architecture: x64
	# - name: Install Apt dependencies
	# run: \|
	# sudo apt update
	# sudo apt install libboost-dev gfortran libopenmpi-dev libpython3-dev \
	# libblas-dev liblapack-dev libhdf5-dev
	# gcc --version
	# - name: Upgrade pip
	# run: python3 -m pip install -U pip setuptools wheel
	# - name: Install Python dependencies
	# run: \|
	# python3 -m pip install ruamel.yaml scons==3.1.2
	# - name: Build Cantera
	# run: \|
	# python3 `which scons` build env_vars=all -j2 debug=n --debug=time \
	# cc_flags=-D_GLIBCXX_ASSERTIONS
	# - name: Set up MATLAB
	# uses: matlab-actions/setup-matlab@v1
	# - name: Run tests
	# uses: matlab-actions/run-tests@v1
	# with:
	# select-by-folder: /home/runner/work/cantera/cantera/test/matlab_experimental


	# ubuntu-multiple-pythons:
	# name: ${{ matrix.os }} with Python ${{ matrix.python-version }}
	# runs-on: ${{ matrix.os }}
	# timeout-minutes: 60
	# strategy:
	# matrix:
	# python-version: ['3.8', '3.10', '3.11', '3.12']
	# os: ['ubuntu-20.04', 'ubuntu-22.04']
	# fail-fast: false
	# env:
	# HDF5_LIBDIR: /usr/lib/x86_64-linux-gnu/hdf5/serial
	# HDF5_INCLUDEDIR: /usr/include/hdf5/serial
	# steps:
	# - uses: actions/checkout@v3
	# name: Checkout the repository
	# with:
	# submodules: recursive
	# - name: Setup Python
	# uses: actions/setup-python@v4
	# with:
	# python-version: ${{ matrix.python-version }}
	# architecture: x64
	# - name: Install Apt dependencies
	# run: \|
	# sudo apt update
	# sudo apt install libboost-dev gfortran libopenmpi-dev libpython3-dev \
	# libblas-dev liblapack-dev libhdf5-dev libfmt-dev
	# gcc --version
	# - name: Upgrade pip
	# run: python3 -m pip install -U pip setuptools wheel
	# - name: Install Python dependencies
	# run: \|
	# python3 -m pip install ruamel.yaml scons==3.1.2 numpy cython pandas pytest \
	# pytest-github-actions-annotate-failures pint graphviz
	# - name: Build Cantera
	# run: \|
	# python3 `which scons` build env_vars=all -j2 debug=n --debug=time \
	# system_fmt=y hdf_libdir=$HDF5_LIBDIR hdf_include=$HDF5_INCLUDEDIR \
	# cc_flags=-D_GLIBCXX_ASSERTIONS
	# - name: Upload shared library
	# uses: actions/upload-artifact@v3
	# if: matrix.python-version == '3.10'
	# with:
	# path: build/lib/libcantera_shared.so
	# name: libcantera_shared-${{ matrix.os }}.so
	# retention-days: 2
	# - name: Test Cantera
	# run:
	# python3 `which scons` test show_long_tests=yes verbose_tests=yes --debug=time
	# - name: Save the wheel file to install Cantera
	# uses: actions/upload-artifact@v3
	# with:
	# path: build/python/dist/Cantera*.whl
	# retention-days: 2
	# name: cantera-wheel-${{ matrix.python-version }}-${{ matrix.os }}
	# if-no-files-found: error

	# clang-compiler:
	# name: LLVM/Clang with Python 3.8
	# runs-on: ubuntu-22.04
	# timeout-minutes: 60
	# env:
	# HDF5_LIBDIR: /usr/lib/x86_64-linux-gnu/hdf5/serial
	# HDF5_INCLUDEDIR: /usr/include/hdf5/serial
	# steps:
	# - uses: actions/checkout@v3
	# name: Checkout the repository
	# with:
	# submodules: recursive
	# - name: Setup Python
	# uses: actions/setup-python@v4
	# with:
	# python-version: 3.8
	# architecture: x64
	# - name: Install Apt dependencies
	# run: \|
	# sudo apt update
	# sudo apt install libboost-dev gfortran libomp-dev libomp5 libopenblas-dev libhdf5-dev
	# - name: Upgrade pip
	# run: python3 -m pip install -U pip setuptools wheel
	# - name: Install Python dependencies
	# run: \|
	# python3 -m pip install ruamel.yaml scons numpy cython pandas pytest pytest-github-actions-annotate-failures pint graphviz
	# - name: Build Cantera
	# run: python3 `which scons` build env_vars=all
	# CXX=clang++-14 CC=clang-14 f90_interface=n extra_lib_dirs=/usr/lib/llvm/lib
	# -j2 debug=n --debug=time hdf_libdir=$HDF5_LIBDIR hdf_include=$HDF5_INCLUDEDIR
	# logging=debug warning_flags='-Wall -Werror -Wsuggest-override'
	# - name: Test Cantera
	# run:
	# python3 `which scons` test show_long_tests=yes verbose_tests=yes --debug=time

	multiple-macos:
	name: ${{ matrix.macos-version }} with Python ${{ matrix.python-version }}
	runs-on: ${{ matrix.macos-version }}
	timeout-minutes: 90
	strategy:
	matrix:
	macos-version: ["macos-12", "macos-14"]
	python-version: ['3.8', '3.10', '3.11', '3.12']
	fail-fast: false
	steps:
	- uses: actions/checkout@v3
	name: Checkout the repository
	with:
	submodules: recursive
	- name: Set up conda
	uses: conda-incubator/setup-miniconda@v2
	with:
	auto-update-conda: true
	python-version: ${{ matrix.python-version }}
	miniforge-variant: Mambaforge
	miniforge-version: latest
	activate-environment: test
	run-post: false
	- name: Install conda dependencies
	# See https://github.com/conda-forge/boost-cpp-feedstock/issues/41 for why we
	# use boost-cpp rather than boost from conda-forge
	# Install SCons >=4.4.0 to make sure that MSVC_TOOLSET_VERSION variable is present
	run: \|
	mamba install -q '"scons>=4.4.0"' numpy cython ruamel.yaml boost-cpp eigen yaml-cpp pandas pytest highfive pint python-graphviz fmt
	shell: pwsh
	- name: Build Cantera
	run: scons build system_eigen=y system_yamlcpp=y system_highfive=y logging=debug
	f90_interface=n debug=n --debug=time -j3
	- name: Test Cantera
	run: scons test show_long_tests=yes verbose_tests=yes --debug=time

	# macos-multiple-pythons:
	# name: ${{ matrix.macos-version }} with Python ${{ matrix.python-version }}
	# runs-on: ${{ matrix.macos-version }}
	# timeout-minutes: 90
	# strategy:
	# matrix:
	# macos-version: ["macos-12", "macos-14"]
	# python-version: ['3.8', '3.10', '3.11', '3.12']
	# fail-fast: false
	# env:
	# PYTHON_CMD: "python${{ matrix.python-version }}"
	# steps:
	# # Attempt to fix intermittent cloning errors. The error message says something like
	# # error: RPC failed; curl 18 transfer closed with outstanding read data remaining
	# # The clone is already being done with --depth=1, so the next recommended fix is to
	# # increase the buffer size. See also:
	# # https://github.com/actions/virtual-environments/issues/2198
	# # https://stackoverflow.com/q/38618885
	# - name: Configure git
	# if: matrix.macos-version == 'macos-12'
	# run: /usr/local/bin/git config --global http.postBuffer 1048576000
	# - name: Configure git
	# if: matrix.macos-version == 'macos-14'
	# run: /usr/bin/git config --global http.postBuffer 1048576000
	# - uses: actions/checkout@v3
	# name: Checkout the repository
	# with:
	# submodules: recursive
	# - name: Setup GH Python
	# uses: actions/setup-python@v4
	# with:
	# python-version: 3.11
	# if: matrix.python-version == '3.11'
	# - name: Install Brew dependencies
	# run: brew install --display-times boost libomp hdf5
	# - name: Setup Homebrew Python
	# # This path should work for future Python versions as well
	# if: matrix.python-version != '3.11'
	# run: \|
	# brew install --display-times python@${{ matrix.python-version }}
	# brew link --force --overwrite python@${{ matrix.python-version }}
	# brew install --display-times scons
	# - name: Upgrade pip
	# run: $PYTHON_CMD -m pip install -U pip setuptools wheel
	# - name: Install Python dependencies
	# run: \|
	# $PYTHON_CMD -m pip install ruamel.yaml numpy cython pandas pytest pytest-github-actions-annotate-failures pint graphviz
	# - name: Install Python dependencies for GH Python
	# if: matrix.python-version == '3.11'
	# run:
	# $PYTHON_CMD -m pip install scons
	# - name: Build Cantera
	# run: scons build env_vars=all -j3 python_cmd=$PYTHON_CMD debug=n --debug=time
	# - name: Upload shared library
	# uses: actions/upload-artifact@v3
	# if: matrix.python-version == '3.10'
	# with:
	# path: build/lib/libcantera_shared.dylib
	# name: libcantera_shared.dylib
	# retention-days: 2
	# - name: Test Cantera
	# run:
	# scons test show_long_tests=yes verbose_tests=yes --debug=time

	# # Coverage is its own job because macOS builds of the samples
	# # use Homebrew gfortran which is not compatible for coverage
	# # with XCode clang. Also, turning off optimization really
	# # slows down the tests
	# coverage:
	# name: Coverage
	# runs-on: ubuntu-latest
	# timeout-minutes: 90
	# env:
	# HDF5_LIBDIR: /usr/lib/x86_64-linux-gnu/hdf5/serial
	# HDF5_INCLUDEDIR: /usr/include/hdf5/serial
	# steps:
	# - uses: actions/checkout@v3
	# name: Checkout the repository
	# with:
	# submodules: recursive
	# - name: Setup python
	# uses: actions/setup-python@v4
	# with:
	# python-version: '3.11'
	# architecture: x64
	# - name: Install Apt dependencies
	# run: \|
	# sudo apt update
	# sudo apt install libboost-dev gfortran liblapack-dev libblas-dev libsundials-dev libhdf5-dev
	# gcc --version
	# - name: Upgrade pip
	# run: python3 -m pip install -U pip setuptools wheel
	# - name: Install Python dependencies
	# run: \|
	# python3 -m pip install ruamel.yaml scons numpy cython pandas scipy pytest \
	# pytest-github-actions-annotate-failures pytest-cov gcovr!=7.0.0 pint graphviz
	# - name: Setup .NET Core SDK
	# uses: actions/setup-dotnet@v2
	# with:
	# dotnet-version: '6.x'
	# - name: Build Cantera
	# run: \|
	# python3 `which scons` build blas_lapack_libs=lapack,blas coverage=y \
	# optimize=n skip_slow_tests=y no_optimize_flags='-DNDEBUG -O0' \
	# FORTRANFLAGS='-O0' env_vars=all -j2 --debug=time \
	# hdf_libdir=$HDF5_LIBDIR hdf_include=$HDF5_INCLUDEDIR
	# - name: Test Cantera
	# run:
	# python3 `which scons` test show_long_tests=yes verbose_tests=yes --debug=time
	# - name: Build the .NET interface
	# run: dotnet build
	# working-directory: interfaces/dotnet
	# - name: Test the .NET interface
	# # Collect coverage info using Coverlet (identified by magic string below)
	# run: \|
	# dotnet test --collect:"XPlat Code Coverage"
	# mv Cantera.Tests/TestResults/*/coverage.cobertura.xml .
	# dotnet new tool-manifest
	# dotnet tool install --local dotnet-reportgenerator-globaltool
	# dotnet reportgenerator -reports:"coverage.cobertura.xml" -targetdir:"coveragereport" -reporttypes:Html
	# working-directory: interfaces/dotnet
	# - name: Process coverage files
	# run: \|
	# gcovr --root . --exclude-unreachable-branches --exclude-throw-branches \
	# --exclude-directories '\.sconf_temp' --exclude-directories 'build/ext$' \
	# --exclude '.ext.' --exclude '(.+/)?_cantera\.cpp$' --exclude '^test.*' \
	# --xml coverage.xml --html-details htmlcoverage.html --txt
	# - name: Archive C++ coverage results
	# uses: actions/upload-artifact@v3
	# with:
	# name: cxx-coverage-report
	# path: htmlcoverage*
	# retention-days: 5
	# - name: Archive Python coverage results
	# uses: actions/upload-artifact@v3
	# with:
	# name: python-coverage-report
	# path: build/python-coverage*
	# retention-days: 5
	# - name: Archive .NET coverage results
	# uses: actions/upload-artifact@v3
	# with:
	# name: dotnet-coverage-report
	# path: interfaces/dotnet/coveragereport*
	# retention-days: 5
	# - name: Upload Coverage to Codecov
	# uses: codecov/codecov-action@v3
	# with:
	# verbose: true
	# files: ./coverage.xml,./build/pycov.xml,./interfaces/dotnet/coverage.cobertura.xml
	# fail_ci_if_error: true

	# docs:
	# name: Build docs
	# runs-on: ubuntu-latest
	# timeout-minutes: 60
	# defaults:
	# run:
	# shell: bash -l {0}
	# env:
	# DEPLOY: ${{ github.event_name == 'push' && github.repository_owner == 'Cantera' && endsWith(github.ref, 'main') }}
	# steps:
	# - uses: actions/checkout@v3
	# name: Checkout the repository
	# with:
	# submodules: recursive
	# - name: Set up conda
	# uses: conda-incubator/setup-miniconda@v3
	# with:
	# auto-update-conda: true
	# python-version: "3.11"
	# miniforge-variant: Mambaforge
	# miniforge-version: latest
	# activate-environment: test
	# - name: Install Apt dependencies
	# run: \|
	# sudo apt update
	# sudo apt install libboost-dev graphviz texlive-bibtex-extra \
	# libblas-dev liblapack-dev libhdf5-dev libfmt-dev libsundials-dev
	# - name: Install conda dependencies
	# run: \|
	# mamba install -q doxygen=1.9.7 scons pip
	# - name: Upgrade pip
	# run: pip install -U pip setuptools wheel
	# - name: Install Python dependencies
	# run: \|
	# pip install ruamel.yaml scons numpy cython 'sphinx>=7.2,<8' \
	# sphinxcontrib-matlabdomain sphinxcontrib-doxylink sphinxcontrib-bibtex \
	# pydata-sphinx-theme==0.14.1 sphinx-argparse sphinx_design myst-nb \
	# sphinx-copybutton matplotlib pandas scipy pint
	# pip install "git+https://github.com/sphinx-gallery/sphinx-gallery.git@master"
	# pip install "git+https://github.com/Cantera/sphinx-tags.git@main"
	# - name: Build Cantera
	# run: scons build -j2 debug=n optimize=y use_pch=n
	# - name: Build documentation
	# run: scons sphinx doxygen logging=debug
	# - name: Ensure 'scons help' options work
	# run: \|
	# scons help --options
	# scons help --list-options
	# scons help --option=prefix
	# - name: Create archive for docs output
	# run: \|
	# cd build/doc
	# tar --exclude=".map" --exclude=".md5" -czf docs.tar.gz html
	# if: failure() \|\| success()
	# - name: Store archive of docs output
	# uses: actions/upload-artifact@v3
	# with:
	# path: build/doc/docs.tar.gz
	# name: docs
	# retention-days: 14
	# if: failure() \|\| success()
	# # The known_hosts key is generated with `ssh-keygen -F cantera.org` from a
	# # machine that has previously logged in to cantera.org and trusts
	# # that it logged in to the right machine
	# - name: Set up SSH key and host for deploy
	# if: env.DEPLOY == 'true'
	# uses: shimataro/ssh-key-action@v2
	# with:
	# key: ${{ secrets.CTDEPLOY_KEY }}
	# known_hosts: ${{ secrets.CTDEPLOY_HOST }}
	# - name: Upload the docs
	# if: env.DEPLOY == 'true'
	# env:
	# RSYNC_USER: "ctdeploy"
	# RSYNC_SERVER: "cantera.org"
	# RSYNC_DEST: "cantera/dev"
	# DOCS_OUTPUT_DIR: "./build/doc/html/"
	# run: \|
	# rsync -avzP --checksum --exclude='.map' --exclude='.md5' \
	# --delete --delete-excluded --filter='P .htaccess' \
	# "${DOCS_OUTPUT_DIR}" ${RSYNC_USER}@${RSYNC_SERVER}:${RSYNC_DEST}

	# run-examples:
	# name: Run Python ${{ matrix.python-version }} examples on ${{ matrix.os }}
	# runs-on: ${{ matrix.os }}
	# timeout-minutes: 60
	# needs: ["ubuntu-multiple-pythons"]
	# strategy:
	# matrix:
	# os: ["ubuntu-20.04", "ubuntu-22.04"]
	# python-version: ['3.8', '3.10', '3.11', '3.12']
	# fail-fast: false
	# env:
	# HDF5_LIBDIR: /usr/lib/x86_64-linux-gnu/hdf5/serial
	# HDF5_INCLUDEDIR: /usr/include/hdf5/serial
	# steps:
	# # We're not building Cantera here, we only need the checkout for the samples
	# # folder, so no need to do a recursive checkout
	# - uses: actions/checkout@v3
	# name: Checkout the repository
	# - name: Setup Python
	# uses: actions/setup-python@v4
	# with:
	# python-version: ${{ matrix.python-version }}
	# architecture: x64
	# - name: Install Apt dependencies
	# run: \|
	# sudo apt update
	# sudo apt install graphviz libhdf5-103 libfmt-dev
	# - name: Download the wheel artifact
	# uses: actions/download-artifact@v3
	# with:
	# name: cantera-wheel-${{ matrix.python-version }}-${{ matrix.os }}
	# path: dist
	# - name: Download the Cantera shared library (.so)
	# uses: actions/download-artifact@v3
	# with:
	# name: libcantera_shared-${{ matrix.os }}.so
	# path: build/lib
	# - name: Upgrade pip
	# run: python3 -m pip install -U pip setuptools wheel
	# - name: Install Python dependencies
	# run: \|
	# python3 -m pip install numpy ruamel.yaml pandas pyarrow matplotlib scipy pint graphviz
	# python3 -m pip install --pre --no-index --find-links dist cantera
	# - name: Run the examples
	# # See https://unix.stackexchange.com/a/392973 for an explanation of the -exec part
	# run: \|
	# ln -s libcantera_shared.so build/lib/libcantera_shared.so.3
	# export LD_LIBRARY_PATH=build/lib
	# find samples/python -type f -iname "*.py" \
	# -exec sh -c 'for n; do echo "$n" \| tee -a results.txt && python3 "$n" >> results.txt \|\| exit 1; done' sh {} +
	# env:
	# # The ignore setting here is due to a new warning introduced in Matplotlib==3.6.0
	# PYTHONWARNINGS: "error,ignore:warn_name_set_on_empty_Forward::pyparsing,ignore:datetime.datetime.utcfromtimestamp:DeprecationWarning:"
	# MPLBACKEND: Agg
	# - name: Save the results file for inspection
	# uses: actions/upload-artifact@v3
	# with:
	# path: results.txt
	# retention-days: 2
	# name: example-results
	# # Run this step if the job was successful or failed, but not if it was cancelled
	# # Using always() would run this step if the job was cancelled as well.
	# if: failure() \|\| success()

	# multiple-sundials:
	# name: Sundials ${{ matrix.sundials-ver }} / fmt ${{ matrix.fmt-ver }}
	# runs-on: ubuntu-latest
	# timeout-minutes: 60
	# env:
	# PYTHON_VERSION: 3.8
	# defaults:
	# run:
	# shell: bash -l {0}
	# strategy:
	# matrix:
	# include:
	# - sundials-ver: 3
	# fmt-ver: 7.1
	# - sundials-ver: 4
	# fmt-ver: 8.1
	# - sundials-ver: 5.8
	# fmt-ver: 9.1
	# - sundials-ver: 6.4.1
	# fmt-ver: 10
	# - sundials-ver: 6.6
	# fmt-ver: 10
	# fail-fast: false
	# steps:
	# - uses: actions/checkout@v3
	# name: Checkout the repository
	# with:
	# submodules: recursive
	# - uses: conda-incubator/setup-miniconda@v2
	# with:
	# auto-update-conda: true
	# python-version: ${{ env.PYTHON_VERSION }}
	# miniforge-version: latest
	# activate-environment: test
	# name: Set up conda
	# - name: Install conda dependencies
	# # See https://github.com/conda-forge/boost-cpp-feedstock/issues/41 for why we
	# # use boost-cpp rather than boost from conda-forge
	# run: \|
	# conda install -q sundials=${{ matrix.sundials-ver }} scons numpy ruamel.yaml \
	# cython boost-cpp fmt=${{ matrix.fmt-ver }} eigen yaml-cpp pandas \
	# libgomp openblas pytest highfive python-graphviz
	# - name: Build Cantera
	# run: \|
	# scons build system_fmt=y system_eigen=y system_yamlcpp=y system_sundials=y \
	# system_highfive=y blas_lapack_libs='lapack,blas' -j2 logging=debug debug=n \
	# optimize_flags='-O3 -ffast-math -fno-finite-math-only'
	# - name: Test Cantera
	# run: scons test-zeroD test-python-reactor show_long_tests=yes verbose_tests=yes
	# - name: Test Install
	# # spot-check installation locations
	# run: \|
	# scons install
	# test -f ${CONDA_PREFIX}/lib/libcantera_shared.so
	# test -f ${CONDA_PREFIX}/include/cantera/base/Solution.h
	# test -f ${CONDA_PREFIX}/bin/ck2yaml
	# test -f ${CONDA_PREFIX}/share/cantera/data/gri30.yaml
	# test -d ${CONDA_PREFIX}/share/cantera/samples
	# test -d ${CONDA_PREFIX}/share/cantera/samples/python
	# test -d ${CONDA_PREFIX}/lib/python${{ env.PYTHON_VERSION }}/site-packages/cantera
	# - name: Test Essentials
	# # ensure that Python package loads and converter scripts work
	# run: \|
	# python -c 'import cantera as ct; import sys; sys.exit(0) if ct.__version__.startswith("3.1.0") else sys.exit(1)'
	# ck2yaml --input=test/data/h2o2.inp --output=h2o2-test.yaml
	# test -f h2o2-test.yaml
	# cti2yaml test/data/ch4_ion.cti ch4_ion-test.yaml
	# test -f ch4_ion-test.yaml
	# yaml2ck data/h2o2.yaml --mechanism=h2o2-test.ck
	# test -f h2o2-test.ck

	# windows-2022:
	# name: ${{ matrix.os }}, MSVC ${{ matrix.vs-toolset }}, Python ${{ matrix.python-version }}, fmt ${{ matrix.fmt-ver }}
	# runs-on: ${{ matrix.os }}
	# timeout-minutes: 60
	# defaults:
	# run:
	# shell: bash -l {0}
	# strategy:
	# matrix:
	# os: ["windows-2022"]
	# vs-toolset: ["14.1", "14.3"]
	# python-version: ["3.8", "3.10", "3.11", "3.12"]
	# include:
	# - python-version: 3.8
	# fmt-ver: 10
	# - python-version: 3.10
	# fmt-ver: 8.1
	# - python-version: 3.11
	# fmt-ver: 7.1
	# fail-fast: false
	# steps:
	# - uses: actions/checkout@v3
	# name: Checkout the repository
	# with:
	# submodules: recursive
	# - name: Set up conda
	# uses: conda-incubator/setup-miniconda@v2
	# with:
	# auto-update-conda: true
	# python-version: ${{ matrix.python-version }}
	# miniforge-variant: Mambaforge
	# miniforge-version: latest
	# activate-environment: test
	# run-post: false
	# - name: Install conda dependencies
	# # See https://github.com/conda-forge/boost-cpp-feedstock/issues/41 for why we
	# # use boost-cpp rather than boost from conda-forge
	# # Install SCons >=4.4.0 to make sure that MSVC_TOOLSET_VERSION variable is present
	# run: \|
	# mamba install -q '"scons>=4.4.0"' numpy cython ruamel.yaml boost-cpp eigen yaml-cpp pandas pytest highfive pint python-graphviz fmt=${{ matrix.fmt-ver }}
	# shell: pwsh
	# - name: Build Cantera
	# run: scons build system_eigen=y system_yamlcpp=y system_highfive=y logging=debug
	# msvc_toolset_version=${{ matrix.vs-toolset }} f90_interface=n debug=n --debug=time -j2
	# shell: pwsh
	# - name: Upload shared library
	# uses: actions/upload-artifact@v3
	# if: matrix.python-version == '3.10' && matrix.vs-toolset == '14.3'
	# with:
	# path: build/lib/cantera_shared.dll
	# name: cantera_shared.dll
	# retention-days: 2
	# - name: Test Cantera
	# run: scons test show_long_tests=yes verbose_tests=yes --debug=time
	# shell: pwsh
	# - name: Test Install
	# # spot-check installation locations
	# run: \|
	# set -x
	# scons install
	# test -f ${CONDA_PREFIX}/Library/bin/cantera_shared.dll
	# test -f ${CONDA_PREFIX}/Library/include/cantera/base/Solution.h
	# test -f ${CONDA_PREFIX}/Scripts/ck2yaml
	# test -f ${CONDA_PREFIX}/share/cantera/data/gri30.yaml
	# test -d ${CONDA_PREFIX}/share/cantera/samples
	# test -d ${CONDA_PREFIX}/share/cantera/samples/python
	# test -d ${CONDA_PREFIX}/Lib/site-packages/cantera
	# - name: Test Essentials
	# # ensure that Python package loads and converter scripts work
	# run: \|
	# set -x
	# python -c 'import cantera as ct; import sys; sys.exit(0) if ct.__version__.startswith("3.1.0") else sys.exit(1)'
	# ck2yaml --input=test/data/h2o2.inp --output=h2o2-test.yaml
	# test -f h2o2-test.yaml
	# cti2yaml test/data/ch4_ion.cti ch4_ion-test.yaml
	# test -f ch4_ion-test.yaml
	# yaml2ck data/h2o2.yaml --mechanism=h2o2-test.ck
	# test -f h2o2-test.ck

	# windows:
	# name: "Windows 2019, MSVC ${{ matrix.vs-toolset }}, Python ${{ matrix.python-version }}"
	# runs-on: windows-2019
	# timeout-minutes: 60
	# env:
	# BOOST_ROOT: ${{github.workspace}}/3rdparty/boost
	# BOOST_URL: https://boostorg.jfrog.io/artifactory/main/release/1.78.0/source/boost_1_78_0.7z
	# strategy:
	# matrix:
	# vs-toolset: ['14.2']
	# python-version: ["3.8", "3.10", "3.11", "3.12"]
	# fail-fast: false
	# steps:
	# - uses: actions/checkout@v3
	# name: Checkout the repository
	# with:
	# submodules: recursive
	# - name: Set Up Python
	# uses: actions/setup-python@v4
	# with:
	# python-version: ${{ matrix.python-version }}
	# architecture: x64
	# - name: Install Python dependencies
	# run: \|
	# python -m pip install -U pip setuptools wheel
	# python -m pip install 'scons<4.4.0' pypiwin32 numpy ruamel.yaml cython pandas graphviz pytest pytest-github-actions-annotate-failures
	# - name: Restore Boost cache
	# uses: actions/cache@v3
	# id: cache-boost
	# with:
	# path: ${{env.BOOST_ROOT}}
	# key: boost-178-win

	# - name: Install Boost Headers
	# if: steps.cache-boost.outputs.cache-hit != 'true'
	# run: \|
	# BOOST_ROOT=$(echo $BOOST_ROOT \| sed 's/\\/\//g')
	# mkdir -p $BOOST_ROOT
	# curl --progress-bar --location --output $BOOST_ROOT/download.7z $BOOST_URL
	# 7z -o$BOOST_ROOT x $BOOST_ROOT/download.7z -y -bd boost_1_78_0/boost
	# mv $BOOST_ROOT/boost_1_78_0/boost $BOOST_ROOT/boost
	# rm $BOOST_ROOT/download.7z
	# shell: bash
	# - name: Build Cantera
	# run: scons build -j2 boost_inc_dir=%BOOST_ROOT% debug=n logging=debug
	# python_package=full env_vars=USERPROFILE,GITHUB_ACTIONS
	# msvc_version=${{ matrix.vs-toolset }} f90_interface=n --debug=time
	# shell: cmd
	# - name: Test Cantera
	# run: scons test show_long_tests=yes verbose_tests=yes --debug=time

	# # Adapted from https://www.scivision.dev/intel-oneapi-github-actions/
	# linux-intel-oneapi:
	# name: intel-oneAPI on Ubuntu, Python 3.8
	# runs-on: ubuntu-latest
	# timeout-minutes: 60
	# env:
	# INTEL_REPO: https://apt.repos.intel.com
	# INTEL_KEY: GPG-PUB-KEY-INTEL-SW-PRODUCTS-2023.PUB
	# HDF5_LIBDIR: /usr/lib/x86_64-linux-gnu/hdf5/serial
	# HDF5_INCLUDEDIR: /usr/include/hdf5/serial
	# steps:
	# - name: Intel Apt repository
	# timeout-minutes: 1
	# run: \|
	# wget ${INTEL_REPO}/intel-gpg-keys/${INTEL_KEY}
	# sudo apt-key add ${INTEL_KEY}
	# rm ${INTEL_KEY}
	# echo "deb ${INTEL_REPO}/oneapi all main" \| sudo tee /etc/apt/sources.list.d/oneAPI.list
	# sudo apt-get update
	# - name: Install Intel oneAPI
	# timeout-minutes: 15
	# run: \|
	# sudo apt-get install intel-oneapi-compiler-fortran intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic \
	# intel-oneapi-mpi intel-oneapi-mpi-devel intel-oneapi-mkl ninja-build libboost-dev libhdf5-dev
	# - uses: actions/checkout@v3
	# name: Checkout the repository
	# with:
	# submodules: recursive
	# - name: Setup Python
	# uses: actions/setup-python@v4
	# with:
	# python-version: 3.8
	# architecture: x64
	# - name: Upgrade pip
	# run: python3 -m pip install -U pip setuptools wheel
	# - name: Install Python dependencies
	# run: \|
	# python3 -m pip install ruamel.yaml scons numpy cython pandas pytest \
	# pytest-github-actions-annotate-failures pint graphviz
	# - name: Setup Intel oneAPI environment
	# run: \|
	# source /opt/intel/oneapi/setvars.sh
	# printenv >> $GITHUB_ENV
	# - name: Build Cantera
	# run: python3 `which scons` build env_vars=all CC=icx CXX=icpx -j2 debug=n
	# hdf_libdir=$HDF5_LIBDIR hdf_include=$HDF5_INCLUDEDIR
	# --debug=time f90_interface=n # FORTRAN=ifx
	# - name: Test Cantera
	# run: \|
	# python3 `which scons` test show_long_tests=yes verbose_tests=yes --debug=time

	# windows-mingw:
	# name: mingw on Windows, Python 3.10
	# runs-on: windows-2022
	# timeout-minutes: 120 # MinGW is slooooow
	# env:
	# BOOST_ROOT: ${{github.workspace}}/3rdparty/boost
	# BOOST_URL: https://boostorg.jfrog.io/artifactory/main/release/1.78.0/source/boost_1_78_0.7z
	# steps:
	# - uses: actions/checkout@v3
	# name: Checkout the repository
	# with:
	# submodules: recursive
	# - name: Set Up Python
	# uses: actions/setup-python@v4
	# with:
	# python-version: "3.10"
	# architecture: x64
	# - name: Install Python dependencies
	# run: \|
	# python -m pip install -U pip setuptools wheel
	# python -m pip install scons pypiwin32 numpy ruamel.yaml cython h5py pandas pytest pytest-github-actions-annotate-failures pint graphviz
	# - name: Restore Boost cache
	# uses: actions/cache@v3
	# id: cache-boost
	# with:
	# path: ${{env.BOOST_ROOT}}
	# key: boost-178-win
	# - name: Set up MinGW
	# uses: egor-tensin/setup-mingw@v2
	# with:
	# platform: x64
	# static: false
	# version: 12.2
	# - name: Install Boost Headers
	# if: steps.cache-boost.outputs.cache-hit != 'true'
	# run: \|
	# BOOST_ROOT=$(echo $BOOST_ROOT \| sed 's/\\/\//g')
	# mkdir -p $BOOST_ROOT
	# curl --progress-bar --location --output $BOOST_ROOT/download.7z $BOOST_URL
	# 7z -o$BOOST_ROOT x $BOOST_ROOT/download.7z -y -bd boost_1_78_0/boost
	# mv $BOOST_ROOT/boost_1_78_0/boost $BOOST_ROOT/boost
	# rm $BOOST_ROOT/download.7z
	# shell: bash
	# - name: Build Cantera
	# run: scons build -j2 boost_inc_dir=%BOOST_ROOT% debug=n logging=debug
	# python_package=full env_vars=USERPROFILE,PYTHONPATH,GITHUB_ACTIONS
	# toolchain=mingw f90_interface=n --debug=time
	# shell: cmd
	# - name: Upload Wheel
	# uses: actions/upload-artifact@v3
	# with:
	# path: build\python\dist\Cantera*.whl
	# name: Cantera-win_amd64.whl
	# retention-days: 2
	# - name: Test Cantera
	# run: scons test show_long_tests=yes verbose_tests=yes --debug=time
	# - name: Upload Test binaries
	# if: always()
	# uses: actions/upload-artifact@v3
	# with:
	# path: \|
	# build/test/*/.exe
	# build/lib/*.dll
	# name: mingw-gtest-binaries
	# retention-days: 2

	# dotnet:
	# name: .NET on ${{ matrix.os }}
	# strategy:
	# matrix:
	# os: [ubuntu-22.04, windows-2022, macos-11]
	# fail-fast: false
	# runs-on: ${{ matrix.os }}
	# needs: [ubuntu-multiple-pythons, macos-multiple-pythons, windows-2022]
	# timeout-minutes: 60
	# steps:
	# - uses: actions/checkout@v3
	# name: Checkout the repository
	# - name: Set up conda
	# uses: conda-incubator/setup-miniconda@v2
	# with:
	# auto-update-conda: true
	# python-version: "3.10"
	# miniforge-variant: Mambaforge
	# miniforge-version: latest
	# activate-environment: test
	# - name: Install Python dependencies
	# run: python3 -m pip install ruamel.yaml
	# - name: Install library dependencies with Conda (Windows)
	# # fmt needs to match the version of the windows-2022 runner selected to upload
	# # the cantera_shared.dll artifact
	# run: mamba install -q yaml-cpp mkl highfive fmt=8.1
	# shell: pwsh
	# if: matrix.os == 'windows-2022'
	# - name: Install Brew dependencies (macOS)
	# run: brew install --display-times hdf5
	# if: matrix.os == 'macos-11'
	# - name: Install Apt dependencies (Ubuntu)
	# run: sudo apt install libhdf5-dev libfmt-dev
	# if: matrix.os == 'ubuntu-22.04'
	# - name: Setup .NET Core SDK
	# uses: actions/setup-dotnet@v2
	# with:
	# dotnet-version: '6.x'
	# - name: Download the Cantera shared library (.so)
	# uses: actions/download-artifact@v3
	# with:
	# name: libcantera_shared-ubuntu-22.04.so
	# path: build/lib
	# - name: Download the Cantera shared library (.dylib)
	# uses: actions/download-artifact@v3
	# with:
	# name: libcantera_shared.dylib
	# path: build/lib
	# - name: Download the Cantera shared library (.dll)
	# uses: actions/download-artifact@v3
	# with:
	# name: cantera_shared.dll
	# path: build/lib
	# - name: Build the .NET interface
	# run: dotnet build
	# working-directory: interfaces/dotnet
	# - name: Test the .NET interface
	# run: dotnet test
	# working-directory: interfaces/dotnet
	# - name: Run the .NET samples
	# run: \|
	# dotnet run --project examples/Application
	# dotnet run --project examples/SoundSpeed
	# working-directory: interfaces/dotnet

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

CI #287

Workflow file

CI #287

Jobs

Run details

Workflow file for this run