Update to new tensor inheritance. (#116)

* Update workflows (#109) * Delete target directory * Update build.yml * Update JavaDoc. * Added coalesce and dropZero methods to all sparse COO tensor objects. * Updated toString methods for all tensor arrays types. Sparse arrays now use abbreviated arrays when printing indices/pointers. All arrays now only call method from PrintOptions once to ensure no unexpected issues can arise from PrintOptions being updated asynchronously. * Simplified naming conventions for operations. * Updated javadoc for dense matrices. * Fixed issue with matrix market write for coordinate matrices. Updated sparse toString methods for all sparse arrays. Added tests. * Added generic ring/semiring tensors. Added dense and sparse vector, matrix, and tensors which use a generic ring or semiring as the elements. * Tensor inheritance (#115) * Updated inheritance of tensors. - All ring tensors now inherit from their equivalent semiring tensors. - All field tensors now inherit from their equivalent ring tensors. - Added tests for Complex64 numbers. * Added Tests - Removed redundant transpose classes. * Fixed Javadoc. * Remove duplicated code. * Added tests. - Fixed bugs that caused failing tests. * Added tests. - Fixed bugs that caused failing tests. * Added tests. - Fixed bugs which failing tests. * Fix for norms. - Updated and fixed matrix and vector norms - Changes to norms are reflected in the Condition.java for computing condition numbers. * Added balancing decomposition * Small fixes. * Remove debug main method. * Update Javadoc. * All matrix object now use PrettyPrint * Refactor ArrayUtils.java - Unneeded methods removed. - Many methods moved to ArrayBuilder, ArrayConversions or ArrayJoiner utility classes. - Consolidated/Generified methods where it made sense. * Refactor of random array/tensor generation. - Added distributions which can be randomly sampled for improved random array creation.
jacobdwatters · Jan 26, 2025 · 12e4bc3 · 12e4bc3
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diff --git a/docs/allclasses-index.html b/docs/allclasses-index.html
diff --git a/docs/allpackages-index.html b/docs/allpackages-index.html
diff --git a/docs/constant-values.html b/docs/constant-values.html
diff --git a/docs/deprecated-list.html b/docs/deprecated-list.html
@@ -1,50 +1,55 @@
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 <body class="deprecated-list-page">
-<script type="text/javascript">var pathtoroot = "./";
+<script type="text/javascript">const pathtoroot = "./";
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 <noscript>
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 <header role="banner">
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+<div class="nav-content">
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 <h1 title="Deprecated API" class="title">Deprecated API</h1>
@@ -60,40 +65,27 @@ <h2 title="Contents">Contents</h2>
 <div class="summary-table two-column-summary">
 <div class="table-header col-first">Method</div>
 <div class="table-header col-last">Description</div>
-<div class="col-summary-item-name even-row-color"><a href="flag4j/org/flag4j/linalg/operations/TransposeDispatcher.html#dispatch(org.flag4j.arrays.dense.CMatrix)">org.flag4j.linalg.ops.TransposeDispatcher.dispatch<wbr>(CMatrix)</a></div>
-<div class="col-last even-row-color"></div>
-<div class="col-summary-item-name odd-row-color"><a href="flag4j/org/flag4j/linalg/operations/TransposeDispatcher.html#dispatchHermitian(org.flag4j.arrays.dense.CMatrix)">org.flag4j.linalg.ops.TransposeDispatcher.dispatchHermitian<wbr>(CMatrix)</a></div>
-<div class="col-last odd-row-color"></div>
 <div class="col-summary-item-name even-row-color"><a href="flag4j/org/flag4j/linalg/TensorInvert.html#inv(org.flag4j.arrays.dense.CTensor,int)">org.flag4j.linalg.TensorInvert.inv<wbr>(CTensor, int)</a></div>
 <div class="col-last even-row-color"></div>
 <div class="col-summary-item-name odd-row-color"><a href="flag4j/org/flag4j/linalg/TensorInvert.html#inv(org.flag4j.arrays.dense.Tensor,int)">org.flag4j.linalg.TensorInvert.inv<wbr>(Tensor, int)</a></div>
 <div class="col-last odd-row-color"></div>
-<div class="col-summary-item-name even-row-color"><a href="flag4j/org/flag4j/linalg/VectorNorms.html#norm(org.flag4j.algebraic_structures.fields.Complex128...)">org.flag4j.linalg.VectorNorms.norm<wbr>(Complex128...)</a></div>
-<div class="col-last even-row-color"></div>
-<div class="col-summary-item-name odd-row-color"><a href="flag4j/org/flag4j/linalg/VectorNorms.html#norm(org.flag4j.algebraic_structures.fields.Complex128%5B%5D,double)">org.flag4j.linalg.VectorNorms.norm<wbr>(Complex128[], double)</a></div>
-<div class="col-last odd-row-color"></div>
-<div class="col-summary-item-name even-row-color"><a href="flag4j/org/flag4j/linalg/VectorNorms.html#norm(org.flag4j.arrays.dense.CVector)">org.flag4j.linalg.VectorNorms.norm<wbr>(CVector)</a></div>
-<div class="col-last even-row-color"></div>
-<div class="col-summary-item-name odd-row-color"><a href="flag4j/org/flag4j/linalg/VectorNorms.html#norm(org.flag4j.arrays.dense.CVector,double)">org.flag4j.linalg.VectorNorms.norm<wbr>(CVector, double)</a></div>
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+<script type="text/javascript">document.addEventListener("DOMContentLoaded", (e) => {
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diff --git a/docs/element-list b/docs/element-list
@@ -1,21 +1,20 @@
 module:flag4j
 org.flag4j.algebraic_structures
-org.flag4j.algebraic_structures.fields
-org.flag4j.algebraic_structures.rings
-org.flag4j.algebraic_structures.semirings
 org.flag4j.arrays
 org.flag4j.arrays.backend
-org.flag4j.arrays.backend
-org.flag4j.arrays.backend.field
-org.flag4j.arrays.backend.ring
-org.flag4j.arrays.backend.semiring
+org.flag4j.arrays.backend.field_arrays
+org.flag4j.arrays.backend.primitive_arrays
+org.flag4j.arrays.backend.ring_arrays
+org.flag4j.arrays.backend.semiring_arrays
+org.flag4j.arrays.backend.smart_visitors
 org.flag4j.arrays.dense
 org.flag4j.arrays.sparse
 org.flag4j.concurrency
 org.flag4j.io
 org.flag4j.io.parsing
 org.flag4j.linalg
 org.flag4j.linalg.decompositions
+org.flag4j.linalg.decompositions.balance
 org.flag4j.linalg.decompositions.chol
 org.flag4j.linalg.decompositions.hess
 org.flag4j.linalg.decompositions.lu
@@ -24,6 +23,7 @@ org.flag4j.linalg.decompositions.schur
 org.flag4j.linalg.decompositions.svd
 org.flag4j.linalg.decompositions.unitary
 org.flag4j.linalg.ops
+org.flag4j.linalg.ops.common
 org.flag4j.linalg.ops.common.complex
 org.flag4j.linalg.ops.common.field_ops
 org.flag4j.linalg.ops.common.real
@@ -38,6 +38,7 @@ org.flag4j.linalg.ops.dense_sparse.csr.field_ops
 org.flag4j.linalg.ops.dense_sparse.csr.real
 org.flag4j.linalg.ops.dense_sparse.csr.real_complex
 org.flag4j.linalg.ops.dense_sparse.csr.real_field_ops
+org.flag4j.linalg.ops.dense_sparse.csr.semiring_ops
 org.flag4j.linalg.ops.dense.complex
 org.flag4j.linalg.ops.dense.field_ops
 org.flag4j.linalg.ops.dense.real
@@ -46,14 +47,15 @@ org.flag4j.linalg.ops.dense.ring_ops
 org.flag4j.linalg.ops.dense.semiring_ops
 org.flag4j.linalg.ops.sparse
 org.flag4j.linalg.ops.sparse.coo
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-org.flag4j.linalg.ops.sparse.coo.field_ops
 org.flag4j.linalg.ops.sparse.coo.real
 org.flag4j.linalg.ops.sparse.coo.real_complex
+org.flag4j.linalg.ops.sparse.coo.ring_ops
 org.flag4j.linalg.ops.sparse.coo.semiring_ops
-org.flag4j.linalg.ops.sparse.csr.field_ops
+org.flag4j.linalg.ops.sparse.csr
 org.flag4j.linalg.ops.sparse.csr.real
 org.flag4j.linalg.ops.sparse.csr.real_complex
+org.flag4j.linalg.ops.sparse.csr.ring_ops
+org.flag4j.linalg.ops.sparse.csr.semiring_ops
 org.flag4j.linalg.solvers
 org.flag4j.linalg.solvers.exact
 org.flag4j.linalg.solvers.exact.triangular