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SBOL Viz: A web based visualisation tool for Synthetic Biology sequences based on the Synthetic Biology Open Language

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jakezion/sbolvisual

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SBOL Viz [Standard 3.0]

How to Run:

  • Download and install NodeJS
  • Download Zip file of project or clone the repository
  • Locate repository location in Git Bash
  • Enter "node app.js"
  • Open Localhost:5858 on a browser

Find examples of SBOL visual data in the "public/jsonld" folder

What its about

SBOL Viz is a web-based visualisation tool for the 3rd iteration of the SBOL specification that will:

  • Convert JSON data into a glyph format
  • Allow sequences of glyphs to be downloaded
  • Allow sequence to be expanded for advanced users
  • Convert JSON data into a list view for advanced users

Current Objectives

  • Create simple layout for webpage
  • Add navbar onto text area to allow json-ld view and parsed view
  • Add glyph view
  • Add expanded view on glyphs (for advanced users)
  • Create real time updated sequence of glyphs if correct syntax is used
  • Add export function for glyphs
  • Add list tab
  • Add extended view on list (for advanced users)

Other information

This is a 3rd Year Project for Jake Sumner at Keele University, Supervised by Goksel Misirli.

Please feel free to add any suggestions for improvements to the site and answer poll for front end design choices: Questionnaire.

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SBOL Viz: A web based visualisation tool for Synthetic Biology sequences based on the Synthetic Biology Open Language

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