Jupyter notebook covering the basics of magnetic resonance analysis
A static version of this notebook is available here.
The source code is available here. It is a copy of the original by moloney
With the source code and a suitable Python environment you can run a "live" version of this notebook on your own computer. This will allow you to make modifications to the notebook and see the results immediately.
You will need python (preferably v3.5 or later) along with some standard numeric and scientific packages and the jupyter notebook server to run this notebook.
Anaconda is a cross-platform option (Windows, OSX, Linux). On Linux you might also just use your distributions package manager (e.g. apt-get install python3-numpy on Debian/Ubuntu).
Some specific packages are needed for this notebook other than the standard scientific libraries included in Anaconda. These are to provide access to specific file formats:
Of these pydicom and nibabel are available in the conda-forge channel and nmrglue can be installed with pip.
A live version of the notebook may also be started in binder using the button below:
