Merge pull request #25 from jasenfinch/devel

v0.8.1
jasenfinch · Sep 9, 2021 · 3eb1ea7 · 3eb1ea7
2 parents de9e06c + 551895e
commit 3eb1ea7
Show file tree

Hide file tree

Showing 12 changed files with 242 additions and 60 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: hrm
 Title: Install, Load and Update R Packages for High Resolution Metabolomics Analyses
-Version: 0.8.0
+Version: 0.8.1
 Authors@R: person("Jasen", "Finch", email = "jsf9@aber.ac.uk", role = c("aut", "cre"))
 Description: Easily install, load and update R packages for high resolution metabolomics analyses.
 URL: jasenfinch.github.io/hrm/
@@ -31,12 +31,10 @@ Imports: dplyr,
         metaboReports
 License: GPL-3
 Encoding: UTF-8
-LazyData: true
-RoxygenNote: 7.1.1
+RoxygenNote: 7.1.2
 Suggests: testthat,
     covr
-Remotes: aberHRML/metaboData,
-        aberHRML/binneR,
+Remotes: aberHRML/binneR,
         jasenfinch/metabolyseR,
         jasenfinch/profilePro,
         jasenfinch/mzAnnotation,

diff --git a/NEWS.md b/NEWS.md
@@ -0,0 +1,5 @@
+# hrm 0.8.1
+
+* Added a `NEWS.md` file to track changes to the package.
+
+* Removed aberHRML/metabData from `Remotes` field of DESCRIPTION as package [`metaboData`](https://aberhrml.github.io/metaboData/) is now available from CRAN.
diff --git a/README.md b/README.md
@@ -18,18 +18,18 @@ analyses of high resolution metabolomics data.
 
 `hrm` packages include:
 
-  - [metaboData](https://github.com/aberHRML/metaboData)
-  - [binneR](https://github.com/aberHRML/binneR)
-  - [metabolyseR](https://github.com/jasenfinch/metabolyseR)
-  - [profilePro](https://github.com/jasenfinch/profilePro)
-  - [mzAnnotation](https://github.com/jasenfinch/mzAnnotation)
-  - [MFassign](https://github.com/jasenfinch/MFassign)
-  - [construction](https://github.com/jasenfinch/construction)
-  - [composition](https://github.com/jasenfinch/composition)
-  - [riches](https://github.com/jasenfinch/riches)
-  - [metaboMisc](https://github.com/jasenfinch/metaboMisc)
-  - [metaboWorkflows](https://github.com/jasenfinch/metaboWorkflows)
-  - [metaboReports](https://github.com/jasenfinch/metaboReports)
+-   [metaboData](https://github.com/aberHRML/metaboData)
+-   [binneR](https://github.com/aberHRML/binneR)
+-   [metabolyseR](https://github.com/jasenfinch/metabolyseR)
+-   [profilePro](https://github.com/jasenfinch/profilePro)
+-   [mzAnnotation](https://github.com/jasenfinch/mzAnnotation)
+-   [MFassign](https://github.com/jasenfinch/MFassign)
+-   [construction](https://github.com/jasenfinch/construction)
+-   [composition](https://github.com/jasenfinch/composition)
+-   [riches](https://github.com/jasenfinch/riches)
+-   [metaboMisc](https://github.com/jasenfinch/metaboMisc)
+-   [metaboWorkflows](https://github.com/jasenfinch/metaboWorkflows)
+-   [metaboReports](https://github.com/jasenfinch/metaboReports)
 
 ## Installation
 
@@ -45,17 +45,19 @@ Loading the `hrm` packages will load the included R packages.
 
 ``` r
 library(hrm)
+#> Warning in .recacheSubclasses(def@className, def, env): undefined subclass
+#> "numericVector" of class "Mnumeric"; definition not updated
 #> ── Attaching packages ───────────────────────────────────────────── hrm 0.8.0 ──
-#> ✓ metaboData      0.4.0      ✓ construction    0.2.8 
-#> ✓ binneR          2.3.4      ✓ composition     0.1.4 
-#> ✓ metabolyseR     0.13.2     ✓ riches          0.2.0 
-#> ✓ profilePro      0.6.5      ✓ metaboMisc      0.4.0 
-#> ✓ mzAnnotation    1.7.2      ✓ metaboWorkflows 0.8.5 
-#> ✓ MFassign        0.7.6      ✓ metaboReports   0.8.2
-#> ── Attaching packages ─────────────────────────────────────── tidyverse 1.3.0 ──
-#> ✓ tibble  3.0.4     ✓ dplyr   1.0.2
-#> ✓ tidyr   1.1.2     ✓ stringr 1.4.0
-#> ✓ readr   1.4.0     ✓ forcats 0.5.0
+#> ✓ metaboData      0.6.2      ✓ construction    0.2.10
+#> ✓ binneR          2.5.3      ✓ composition     0.1.4 
+#> ✓ metabolyseR     0.14.2     ✓ riches          0.2.1 
+#> ✓ profilePro      0.7.0      ✓ metaboMisc      0.5.5 
+#> ✓ mzAnnotation    1.7.5      ✓ metaboWorkflows 0.8.10
+#> ✓ MFassign        0.7.10     ✓ metaboReports   0.8.6
+#> ── Attaching packages ─────────────────────────────────────── tidyverse 1.3.1 ──
+#> ✓ tibble  3.1.4     ✓ dplyr   1.0.7
+#> ✓ tidyr   1.1.3     ✓ stringr 1.4.0
+#> ✓ readr   2.0.1     ✓ forcats 0.5.1
 #> ✓ purrr   0.3.4
 #> ── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
 #> x dplyr::collect()    masks xcms::collect()

diff --git a/docs/404.html b/docs/404.html
diff --git a/docs/authors.html b/docs/authors.html
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/news/index.html b/docs/news/index.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -1,6 +1,6 @@
-pandoc: 2.7.3
+pandoc: 2.11.4
 pkgdown: 1.6.1
 pkgdown_sha: ~
 articles: {}
-last_built: 2020-11-16T20:48Z
+last_built: 2021-09-09T21:34Z