gghic

An R package for easy visualization of genomic interaction data

⚠️ This R package is in its early stages. Issues and PRs are welcome.

Author

Minghao Jiang, mjhk@connect.hku.hk

Features

1. Visualise genomic interaction data of multiple chromosomes.
2. Plot chromosome ideograms with highlighted regions above the heatmap.
3. Plot gene tracks under the heatmap easily with a GTF file.
4. Plot tracks of other genomic data, e.g., ChIP-seq peaks, BigWig files, etc., under the heatmap.
5. Plot compartments, TADs, and loops on the heatmap.
6. ...

Installation

To install the gghic package from GitHub, use the following command:

devtools::install_github("jasonwong-lab/gghic", build_vignettes = TRUE)

Usage

You can find the vignettes for gghic by running the following command:

browseVignettes("gghic")

License

gghic is licensed under the GNU General Public License v3.