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Max allele size if more informative
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jasperlinthorst committed Mar 16, 2018
1 parent 87389cb commit 609cc45
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion reveal/refine.py
Original file line number Diff line number Diff line change
@@ -152,7 +152,7 @@ def refine_bubble(sg,bubble,offsets,paths,**kwargs):
source=bubble.source
sink=bubble.sink

logging.info("Realigning bubble between <%s> and <%s>, with %s (cum. size %dbp, in nodes=%d)."%(bubble.source,bubble.sink,kwargs['method'],bubble.cumsize,len(bubble.nodes)-2))
logging.info("Realigning bubble between <%s> and <%s>, with %s (max size %dbp, in nodes=%d)."%(bubble.source,bubble.sink,kwargs['method'],bubble.maxsize,len(bubble.nodes)-2))

if len(bubble.nodes)==3:
logging.fatal("Indel bubble, no point realigning.")

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