Parkinson's disease subtypes identified from cluster analysis of motor and non-motor symptoms

This repository contains data, analyses, figures, and manuscripts for

Jesse Mu, Kallol Ray Chaudhuri, Concha Bielza, Jesús de Pedro Cuesta, Pedro Larrañaga, and Pablo Martinez-Martin. Parkinson's disease subtypes identified from cluster analysis of motor and non-motor symptoms Frontiers in Aging Neuroscience 9:301

The code to reproduce figures is mostly in publication.R which depends first on sourceing preprocessing.R and (maybe??) kmeans-dtree.R and nms30.R.

TODO

• Organize and figure out procedure for exactly reproducing figures. Might be able to put everything in preprocessing
• Rename files to something more sensible (kmeans-dtree -> domains, nms30 -> symptoms)
• Continue to get rid of unnecessary figures