feat: switch to Pixi #426
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| name: CI-CD | |
| # only run on pushes to main or pull requests | |
| on: | |
| push: | |
| # push to any branch * | |
| branches: [ "*" ] | |
| pull_request: | |
| branches: [ main , development ] | |
| jobs: | |
| ################################################################################################ | |
| # Unit-Tests: Run unit tests using pytest | |
| ################################################################################################ | |
| Unit-Tests: | |
| runs-on: ${{ matrix.os }} | |
| timeout-minutes: 15 # Consider increasing timeout | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, macos-14] # , windows-latest removed for now | |
| env: ["py310", "py311", "py312"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install Pixi | |
| uses: prefix-dev/setup-pixi@v0.8.1 | |
| with: | |
| environments: ${{ matrix.env }} | |
| pixi-version: v0.36.0 | |
| cache: true | |
| locked: false # wont be the same because of the tag | |
| - name: Run pytest | |
| run: | | |
| pixi run -e ${{ matrix.env }} test | |
| - name: Upload coverage report artifact to be used by Codecov | |
| # only upload if matrix.os is ubuntu-latest and matrix.python-version is 3.12 | |
| if: matrix.os == 'ubuntu-latest' && matrix.env == 'py312' | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: coverage-report | |
| path: coverage-report | |
| Build-Documentation: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install Pixi | |
| uses: prefix-dev/setup-pixi@v0.8.1 | |
| with: | |
| environments: docs | |
| pixi-version: v0.36.0 | |
| cache: true | |
| locked: false # wont be the same because of the tag | |
| - name: Build documentation | |
| run: | | |
| pixi run -e docs doc-build | |
| Code-Coverage: | |
| needs: Unit-Tests | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| - name: Download coverage.xml artifact | |
| uses: actions/download-artifact@v2 | |
| with: | |
| name: coverage-report | |
| path: coverage-report | |
| - name: Use Codecov to track coverage | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| files: ./coverage-report/coverage.xml | |
| fail_ci_if_error: true | |
| verbose: true | |
| name: codecov-umbrella | |
| # Continuous-Deployment: | |
| # permissions: | |
| # contents: write | |
| # packages: write | |
| # issues: write | |
| # pull-requests: write | |
| # needs: [Unit-Tests] | |
| # # if pulling to main, deploy to PyPI | |
| # if: github.ref == 'refs/heads/main' | |
| # # Set up operating system | |
| # runs-on: ubuntu-latest | |
| # outputs: | |
| # released: ${{ steps.release.outputs.released }} | |
| # version: ${{ steps.release.outputs.version }} | |
| # tag: ${{ steps.release.outputs.tag }} | |
| # # Define job steps | |
| # steps: | |
| # - name: Set up Python 3.12 | |
| # uses: actions/setup-python@v2 | |
| # with: | |
| # python-version: 3.12 | |
| # - name: Check-out repository | |
| # uses: actions/checkout@v2 | |
| # with: | |
| # fetch-depth: 0 | |
| # - name: Python Semantic Release | |
| # id: release | |
| # uses: python-semantic-release/python-semantic-release@master | |
| # with: | |
| # github_token: ${{ secrets.GITHUB_TOKEN }} | |
| # Publish-To-PyPi: | |
| # needs: Continuous-Deployment | |
| # if: needs.Continuous-Deployment.outputs.released == 'true' | |
| # runs-on: ubuntu-latest | |
| # steps: | |
| # - name: Checkout the code with tag ${{ needs.Continuous-Deployment.outputs.tag }} | |
| # uses: actions/checkout@v3 | |
| # with: | |
| # ref: ${{ needs.Continuous-Deployment.outputs.tag }} | |
| # - name: Set up Python 3.12 | |
| # uses: actions/setup-python@v4 | |
| # with: | |
| # python-version: 3.12 | |
| # - name: Install Package-Building Tool | |
| # run: | |
| # python3 -m pip install build twine | |
| # - name: Build package | |
| # run: | |
| # python3 -m build --sdist --wheel --outdir dist/ | |
| # - name: Publish to PyPI | |
| # uses: pypa/gh-action-pypi-publish@release/v1 | |
| # with: | |
| # verbose: true | |
| # user: __token__ | |
| # password: ${{ secrets.PYPI_API_TOKEN }} | |
| # Build-Docker-Images: | |
| # needs: Continuous-Deployment | |
| # if: needs.Continuous-Deployment.outputs.released == 'true' | |
| # runs-on: ubuntu-latest | |
| # steps: | |
| # - name: Checkout code | |
| # uses: actions/checkout@v3 | |
| # with: | |
| # ref: ${{ needs.Continuous-Deployment.outputs.tag }} | |
| # - name: Set up QEMU | |
| # uses: docker/setup-qemu-action@v3 | |
| # - name: Set up Docker Buildx | |
| # uses: docker/setup-buildx-action@v3 | |
| # - name: Login to Docker Hub | |
| # uses: docker/login-action@v3 | |
| # with: | |
| # username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| # password: ${{ secrets.DOCKERHUB_TOKEN }} | |
| # - name: Login to the GitHub Container Registry | |
| # uses: docker/login-action@v3 | |
| # with: | |
| # registry: ghcr.io | |
| # username: ${{ github.actor }} | |
| # password: ${{ secrets.GITHUB_TOKEN }} | |
| # - name: Extract metadata (tags, labels) for Docker | |
| # id: meta | |
| # uses: docker/metadata-action@v3 | |
| # with: | |
| # images: | | |
| # ${{ secrets.DOCKERHUB_USERNAME }}/nbiatoolkit:${{ needs.Continuous-Deployment.outputs.tag }} | |
| # ghcr.io/${{ github.repository }}/nbiatoolkit:${{ needs.Continuous-Deployment.outputs.tag }} | |
| # - name: Build and push Docker images | |
| # uses: docker/build-push-action@v5 | |
| # with: | |
| # context: . | |
| # platforms: linux/amd64,linux/arm64 | |
| # file: ./Dockerfile | |
| # push: true | |
| # tags: | | |
| # ${{ secrets.DOCKERHUB_USERNAME }}/nbiatoolkit:${{ needs.Continuous-Deployment.outputs.tag }} | |
| # ${{ secrets.DOCKERHUB_USERNAME }}/nbiatoolkit:latest | |
| # ghcr.io/${{ github.repository }}/nbiatoolkit:${{ needs.Continuous-Deployment.outputs.tag }} | |
| # ghcr.io/${{ github.repository }}/nbiatoolkit:latest | |
| # labels: ${{ steps.meta.outputs.labels }} | |
| # Test-PyPi-Install: | |
| # needs: Publish-To-PyPi | |
| # runs-on: ${{ matrix.os }} | |
| # strategy: | |
| # matrix: | |
| # os: [ubuntu-latest, macos-latest, macos-14] | |
| # python-version: ["3.12", "3.11", "3.10"] | |
| # steps: | |
| # - uses: actions/checkout@v3 | |
| # - name: Set up Python ${{ matrix.python-version }} | |
| # uses: actions/setup-python@v4 | |
| # with: | |
| # python-version: ${{ matrix.python-version }} | |
| # - name: Install using PyPi | |
| # run: | | |
| # pip install nbiatoolkit==${{ needs.Continuous-Deployment.outputs.version }} | |
| # NBIAToolkit | |
| # Test-Docker-Image: | |
| # needs: Build-Docker-Images | |
| # runs-on: ${{ matrix.os }} | |
| # strategy: | |
| # matrix: | |
| # os: [ubuntu-latest, macos-latest] | |
| # steps: | |
| # - name: Setup Docker to pull images | |
| # uses: docker/setup-buildx-action@v3 | |
| # - name: Install using Docker | |
| # run: | | |
| # docker pull ${{ secrets.DOCKERHUB_USERNAME }}/nbiatoolkit:${{ needs.Continuous-Deployment.outputs.tag }}; | |
| # docker run --rm ${{ secrets.DOCKERHUB_USERNAME }}/nbiatoolkit:${{ needs.Continuous-Deployment.outputs.tag }} NBIAToolkit |