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Folders and files

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fold-grammars

Collection of bgap code for RNA folding

For rudimentary documentation, consult https://bibiserv.cebitec.uni-bielefeld.de/fold-grammars/

Install derived software

Ubuntu

Register janssenlab/software as additional Ubuntu Personal Package Archive (PPA):

sudo add-apt-repository ppa:janssenlab/software
sudo apt update

Install software one or multiple software packages:

  • RNAshapes: sudo apt-get install rnashapes
  • RNAalishapes: sudo apt-get install rnaalishapes
  • pKiss: sudo apt-get install pkiss
  • pAliKiss: sudo apt-get install palikiss
  • KnotInFrame: sudo apt-get install knotinframe
  • RapidShapes: sudo apt-get install rapidshapes
  • aCMs: sudo apt-get install acms

conda

You can alternatively install precompiled binaries for Linux and OSX through (bio)conda:

(We have not (yet) tested the bioconda linux-aarch64 builds!)