remove outdated conda config, fix linting, fix versioning

jlab · Dec 12, 2024 · 2a15449 · 2a15449
1 parent bb72093
commit 2a15449
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Showing 4 changed files with 7 additions and 38 deletions.
diff --git a/meta.yaml b/meta.yaml
diff --git a/pyproject.toml b/pyproject.toml
@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
 
 [project]
 name = "marbel"
-version = "0.0.2"
+dynamic = ["version", "dependencies"]
 authors = [
   { name="Timo Wentong Lin", email="ge2317@uni-giessen.de" },
 
@@ -19,7 +19,6 @@ classifiers = [
           "Programming Language :: Python :: 3.8",
           "Programming Language :: Python :: 3.9",
 ]
-dynamic = ["dependencies"]
 
 [project.urls]
 "Homepage" = "https://github.com/jlab/marbel" 
@@ -44,3 +43,6 @@ include = [
 
 [tool.hatch.metadata]
 allow-direct-references = true
+
+[tool.hatch.version]
+path = "src/marbel/presets.py"
diff --git a/src/marbel/data_generations.py b/src/marbel/data_generations.py
@@ -410,8 +410,8 @@ def generate_report(summary_dir, gene_summary):
     simulated_down_regulated_genes = sum(gene_summary["fold_change_ratio"] <= 0.5)
     with open(f"{summary_dir}/simulation_stats.txt", "w") as f:
         f.write(f"Number of selected genes: {number_of_genes}\n")
-        f.write(f"Number of up regulated genes: {simulated_up_regulated_genes} (percentage: {simulated_up_regulated_genes/number_of_genes})\n")
-        f.write(f"Number of down regulated genes: {simulated_down_regulated_genes} (percentage: {simulated_down_regulated_genes/number_of_genes})\n")
+        f.write(f"Number of up regulated genes: {simulated_up_regulated_genes} (percentage: {simulated_up_regulated_genes / number_of_genes})\n")
+        f.write(f"Number of down regulated genes: {simulated_down_regulated_genes} (percentage: {simulated_down_regulated_genes / number_of_genes})\n")
 
 
 def create_sample_values(gene_summary_df, number_of_samples, first_group, a0, a1):

diff --git a/src/marbel/presets.py b/src/marbel/presets.py
@@ -5,7 +5,7 @@
 from enum import Enum
 import json
 
-__version__ = "0.0.4-alpha"
+__version__ = "0.0.4"
 
 
 CPMS_MEAN_LOG = 3.73411080985053