Mamba #10

	name: integration tests & code style

	on:
	push:
	branches: [ master ]
	pull_request:
	branches: [ master ]

	jobs:
	build-linux:
	runs-on: ubuntu-latest

	steps:
	- name: Checkout Repo
	uses: actions/checkout@v3
	- name: Set up Python
	uses: actions/setup-python@v3
	- name: Install dependencies
	run: \|
	# $CONDA is an environment variable pointing to the root of the miniconda directory
	$CONDA/bin/mamba env update --file environment.yml --name base
	- name: Lint with flake8
	run: \|
	$CONDA/bin/flake8 phylofiller/
	- name: run python tests
	run: \|
	$CONDA/bin/nosetests phylofiller --with-doctest --with-coverage
	- name: convert coverage
	run: \|
	$CONDA/bin/coverage lcov
	- name: send coverage report
	uses: coverallsapp/github-action@master
	with:
	github-token: ${{ secrets.GITHUB_TOKEN }}
	path-to-lcov: "coverage.lcov"

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