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name: integration tests & code style | |
on: | |
push: | |
branches: [ master ] | |
pull_request: | |
branches: [ master ] | |
jobs: | |
build-linux: | |
runs-on: ubuntu-latest | |
steps: | |
- name: Checkout Repo | |
uses: actions/checkout@v3 | |
- name: Set up Python | |
uses: actions/setup-python@v3 | |
- name: Install dependencies | |
run: | | |
# $CONDA is an environment variable pointing to the root of the miniconda directory | |
$CONDA/bin/mamba env update --file environment.yml --name base | |
- name: Lint with flake8 | |
run: | | |
$CONDA/bin/flake8 phylofiller/ | |
- name: run python tests | |
run: | | |
$CONDA/bin/nosetests phylofiller --with-doctest --with-coverage | |
- name: convert coverage | |
run: | | |
$CONDA/bin/coverage lcov | |
- name: send coverage report | |
uses: coverallsapp/github-action@master | |
with: | |
github-token: ${{ secrets.GITHUB_TOKEN }} | |
path-to-lcov: "coverage.lcov" |