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| #target name accession query name accession mdl mdl from mdl to seq from seq to strand trunc pass gc bias score E-value inc description of target | ||
| #------------------- --------- -------------------- --------- --- -------- -------- --------- --------- ------ ----- ---- ---- ----- ------ --------- --- --------------------- | ||
| chr1 - 5S_rRNA RF00001 cm 1 119 228746133 228746015 - no 1 0.61 0.0 118.9 6.6e-24 ! - | ||
| chr1 - 5S_rRNA RF00001 cm 1 119 228748374 228748256 - no 1 0.61 0.0 118.9 6.6e-24 ! - | ||
| chr1 - 5S_rRNA RF00001 cm 1 119 228750615 228750497 - no 1 0.61 0.0 118.9 6.6e-24 ! - | ||
| chr1 - 5S_rRNA RF00001 cm 1 119 228752856 228752738 - no 1 0.61 0.0 118.9 6.6e-24 ! - | ||
| chr1 - 5S_rRNA RF00001 cm 1 119 228755097 228754979 - no 1 0.61 0.0 118.9 6.6e-24 ! - | ||
| chr1 - 5S_rRNA RF00001 cm 1 119 228757312 228757194 - no 1 0.61 0.0 118.9 6.6e-24 ! - | ||
| chr1 - 5S_rRNA RF00001 cm 1 119 228759532 228759414 - no 1 0.61 0.0 118.9 6.6e-24 ! - | ||
| chr11 - U2 RF00004 cm 1 193 62609281 62609091 - no 1 0.44 0.0 191.2 9.7e-40 ! - | ||
| chr10 - U2 RF00004 cm 1 193 103124792 103124602 - no 1 0.45 0.0 179.5 6.2e-37 ! - | ||
| chr17 - U2 RF00004 cm 1 193 41464785 41464594 - no 1 0.43 0.0 172.6 2.8e-35 ! - | ||
| chr6 - tRNA RF00005 cm 1 71 28442402 28442329 - no 1 0.50 0.0 76.8 2.4e-14 ! - | ||
| chr7 - tRNA RF00005 cm 1 71 149007281 149007352 + no 1 0.56 0.0 73.9 1.6e-13 ! - | ||
| chr16 - tRNA RF00005 cm 1 71 73512288 73512216 - no 1 0.51 0.0 73.8 1.7e-13 ! - | ||
| chr19 - Hammerhead_HH10 RF02277 cm 43 110 48561534 48561600 + no 1 0.39 0.0 25.9 7.8 ? - | ||
| chr1 - Hammerhead_HH10 RF02277 cm 1 125 87448923 87448817 - no 1 0.39 0.0 25.8 8.1 ? - | ||
| chr7 - Betaproteobacteria_toxic_sRNA RF02278 cm 1 64 44640963 44640900 - no 1 0.53 0.0 29.2 0.84 ? - | ||
| chr6 - Betaproteobacteria_toxic_sRNA RF02278 cm 1 64 125477691 125477636 - no 1 0.52 0.0 28.8 1.1 ? - | ||
| chr3 - Betaproteobacteria_toxic_sRNA RF02278 cm 1 64 122276154 122276069 - no 1 0.52 0.0 25.7 6.3 ? - | ||
| chr12 - Betaproteobacteria_toxic_sRNA RF02278 cm 1 64 106339815 106339752 - no 1 0.61 0.0 25.6 6.8 ? - | ||
| chr10 - TtnuCD1 RF02279 hmm 5 60 35816692 35816639 - - 6 0.35 0.0 25.8 0.033 ? - | ||
| chr20 - TtnuCD1 RF02279 hmm 5 53 24807863 24807912 + - 6 0.32 0.2 22.0 0.53 ? - | ||
| # | ||
| # Program: cmsearch | ||
| # Version: 1.1.3 (Nov 2019) | ||
| # Pipeline mode: SEARCH | ||
| # Query file: Rfam/Rfam.cm | ||
| # Target file: genome/hg19.fa | ||
| # Option settings: /usr/lib/infernal/cmsearch --tblout cmsearch_Rfam/cmsearch.Rfam.hg19.tbl Rfam/Rfam.cm genome/hg19.fa | ||
| # [ok] |