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This wiki contains tutorials to help get started with Microvessel Chaste library. Installation instructions are on the project home page. The tutorials are available in several formats, click the links below to jump to your preferred one. The Jupyter Notebook format is recommended, as it automatically generates all figures.

Available formats:

• Jupyter Notebooks
• Python
• C++

Jupyter Notebook Tutorials

• Lattice-Based Angiogenesis: run a full 2D lattice-based tumour growth simulation.

• Off-Lattice Angiogenesis: run a full 3D off-lattice angiogenesis simulation.

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Python Tutorials

Paper Tutorials

These are detailed simulations, demonstrating the main features of the library. For more information on individual features or to start with the basics go to the user tutorials.

• Lattice-Based Angiogenesis: run a full 2D lattice-based tumour growth simulation.

• Off-Lattice Angiogenesis: run a full 3D off-lattice angiogenesis simulation.

User Tutorials

• [Build a Vessel Network] (https://github.com/jmsgrogan/MicrovesselChaste/wiki/TestPythonBuildVesselNetworkTutorial): build a vessel network from its individual components.

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C++ Tutorials

Paper Tutorials

These are detailed simulations, demonstrating the main features of the library. For more information on individual features or to start with the basics go to the user tutorials.

• Lattice-Based Tumour Growth: run a full 2D lattice-based tumour growth simulation.

• Off-Lattice Angiogenesis: run a full 3D off-lattice angiogenesis simulation.

User Tutorials

• [Build a Vessel Network] (https://github.com/jmsgrogan/MicrovesselChaste/wiki/TestBuildVesselNetworkTutorial): build a vessel network from its individual components.

• [Blood Flow] (https://github.com/jmsgrogan/MicrovesselChaste/wiki/TestBloodFlowTutorial): set up and solve simple blood flow problems.

• [Solving Pdes] (https://github.com/jmsgrogan/MicrovesselChaste/wiki/TestSolvingPdesTutorial): solve PDEs using a selection of methods.