Neuromodulation - optimization and large scale simulations using Snudda, by Johannes Hjorth
In the folder, examples, there are simulations using Snudda (both replay and adaptive). These examples require that Snudda is installed on your loca machine (including NEURON).
Follow instructions in the notebooks (jupyter).
Open an issue if you are having problems with the simulatons
Frost Nylen J, Hjorth J J J,Grillner S, and Hellgren Kotaleski J, Dopaminergic and Cholinergic Modulation of Large Scale Networks in silico Using Snudda, Frontiers in Neural Circuits, vol. 15, Oct. 2021. https://doi.org/10.3389/fncir.2021.748989
Horizon 2020 Framework Programme (785907, HBP SGA2); Horizon 2020 Framework Programme (945539, HBP SGA3); Vetenskapsrådet (VR-M-2017-02806, VR-M-2020-01652); Swedish e-science Research Center (SeRC); KTH Digital Futures. The computations are enabled by resources provided by the Swedish National Infrastructure for Computing (SNIC) at PDC KTH partially funded by the Swedish Research Council through grant agreement no. 2018-05973. We acknowledge the use of Fenix Infrastructure resources, which are partially funded from the European Union's Horizon 2020 research and innovation programme through the ICEI project under the grant agreement No. 800858.