galaxy

About Galaxy

Galaxy is a web-based platform to develeop and execute bioinformatics workflows. Galaxy has extensive online documentation, a good place to get started is the Galaxy 101

Training material and documentation

• training material
• documentation

Community-developed workflows in Galaxy

• https://usegalaxy.org/workflows/list_published
• https://usegalaxy.eu/workflows/list_published

Running the minimal proof-of-concept RNA-Seq Galaxy pipeline

1. Register or login to your account on Galaxy
2. Open the proof of concept workflow
3. Upload or provide a URL to the input data and run the pipeline using the GUI. Further details on uploading files here

Notes and Contribution

This pipeline is a minimal example of using Galaxy. We welcome contributions to the documentation and workflow, please create an issue or submit a pull request!

How to cite Galaxy

Afgan E, Baker D, Batut B, van den Beek M, Bouvier D, Čech M, Chilton J, Clements D, Coraor N, Grüning BA, Guerler A, Hillman-Jackson J, Hiltemann S, Jalili V, Rasche H, Soranzo N, Goecks J, Taylor J, Nekrutenko A, Blankenberg D. "The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update" Nucleic Acids Res. (2018) 46(W1):W537-W544 doi:10.1093/nar/gky379

see also https://galaxyproject.org/citing-galaxy/ for more ways to cite Galaxy.