Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Use SRA FTP server instead of HTTP #15

Open
wants to merge 2 commits into
base: master
Choose a base branch
from

Conversation

camillescott
Copy link

Switches getdata.py to use the SRA's FTP server. Adds a new function to munge the URLs taken from SraRunInfo.csv. Additionally, isolates the executed code into a main function with an argument parser, with the defaults set the same as the previously hardcoded values.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant