Overview

Tools for implementing upper confidence bound optimization

Contents

• UCB_opt_tools.py - Python code containing tools for performing UCB optimization
• Demos - datasets with examples of how UCB_opt_tools can be employed
  • ATR_Engineering - Acyl-ACP reductase dataset from Greenhalgh et al. 2021 (Nat. Comm.) with simulation of UCB walk

Software Requirements

This code has been tested on the following system(s):

• MacOS Ventura (13.3.1)

Python Dependencies

This code has been tested using the specified version of the following packages:

• numpy 1.20.1
• pandas 1.2.4
• matplotlib 3.5.1
• seaborn 0.11.1
• scikit-learn 0.24.1