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Achievement: YOLOAchievement: StarstruckAchievement: Pull Sharkx2Achievement: Arctic Code Vault Contributor

Achievements

Achievement: YOLOAchievement: StarstruckAchievement: Pull Sharkx2Achievement: Arctic Code Vault Contributor

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jowch/README.md

Hello, Hello! πŸ‘¨β€πŸ’»

Science!

My name is Jonathan and I am an entering Bioengineering graduate student at UCLA! In a past life (undergrad), I studied a Computer Science and Computational Biology. I'm looking to apply my knowledge of ML and stats to my bioengineering research. Some current projects include:

  • Early bacteria biofilm formation in Vibrio cholera
  • Peptide-membrane interactions via small-angle X-ray scattering (SAXS)
  • Using transfomer-based embeddings of amino acid sequences to study peptide families

  • πŸ”­ I’m currently working on peptides and bacteria!
  • 🌱 I’m currently learning transformers and Julia.
  • πŸ’¬ Ask me about my ever growing love for JuliaLang.

Pinned Loading

  1. Wordle.jl Wordle.jl Public

    Wordle in Julia! πŸŸ©πŸŸ¨πŸŸ¨β¬›οΈπŸŸ©

    Julia 20

  2. Himalaya.jl Himalaya.jl Public

    πŸ”πŸ” SAXS diffraction pattern indexing the easy way

    Julia

  3. jowch.github.io jowch.github.io Public

    An mostly-automated personal, academic website

    JavaScript

  4. Lux.jl VAE Lux.jl VAE
    1 
    function train(model::VariationalAutoencoder, data::DataLoader, nepochs, rng; Ξ· = 0.001f0, Ξ² = 1f0)
    2 
        ps, st = Lux.setup(rng, model)
    3
    4 
        # Create the optimiser
    5 
        opt_state = Optimisers.setup(Optimisers.ADAM(Ξ·), ps)