forgot to build

jr-leary7 · Dec 20, 2021 · bbb2192 · bbb2192
1 parent 5a97100
commit bbb2192
Show file tree

Hide file tree

Showing 5 changed files with 35 additions and 10 deletions.
diff --git a/NAMESPACE b/NAMESPACE
@@ -14,25 +14,36 @@ export(RunPHATE)
 export(theme_yehlab)
 import(Seurat)
 import(biomaRt)
-import(dplyr)
-import(ggplot2)
 import(magrittr)
-import(phateR)
 importClassesFrom(SingleCellExperiment,SingleCellExperiment)
 importFrom(Matrix,t)
+importFrom(Seurat,CreateDimReducObject)
+importFrom(Seurat,DimPlot)
 importFrom(Seurat,Embeddings)
 importFrom(Seurat,FindAllMarkers)
 importFrom(Seurat,GetAssayData)
+importFrom(Seurat,Idents)
+importFrom(Seurat,RunPCA)
+importFrom(Seurat,RunTSNE)
+importFrom(Seurat,RunUMAP)
 importFrom(Seurat,Stdev)
+importFrom(Seurat,VariableFeatures)
 importFrom(biomaRt,getLDS)
 importFrom(biomaRt,useMart)
 importFrom(cluster,silhouette)
 importFrom(dplyr,across)
 importFrom(dplyr,bind_rows)
+importFrom(dplyr,case_when)
 importFrom(dplyr,filter)
 importFrom(dplyr,group_by)
 importFrom(dplyr,mutate)
 importFrom(dplyr,pull)
 importFrom(dplyr,summarise)
+importFrom(ggplot2,element_blank)
+importFrom(ggplot2,element_rect)
+importFrom(ggplot2,element_text)
+importFrom(ggplot2,labs)
+importFrom(ggplot2,theme)
 importFrom(matrixStats,rowVars)
+importFrom(phateR,phate)
 importFrom(stats,dist)
diff --git a/man/IntegrateSubclusters.Rd b/man/IntegrateSubclusters.Rd
diff --git a/man/ReduceDimensions.Rd b/man/ReduceDimensions.Rd
diff --git a/man/RunPHATE.Rd b/man/RunPHATE.Rd
diff --git a/man/theme_yehlab.Rd b/man/theme_yehlab.Rd