Merge pull request #141 from jr-leary7/dev #2

	# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
	# Additional help taken from https://fromthebottomoftheheap.net/2020/04/30/rendering-your-readme-with-github-actions/

	on:
	push:
	branches: main
	paths: README.Rmd

	name: render-README

	jobs:
	render:
	runs-on: ubuntu-latest
	env:
	GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
	steps:
	- uses: actions/checkout@v3
	- uses: r-lib/actions/setup-r@v2
	with:
	use-public-rspm: true
	- uses: r-lib/actions/setup-r-dependencies@v2
	- uses: r-lib/actions/setup-pandoc@v2

	- name: install CRAN packages
	run: Rscript -e 'install.packages(c("rmarkdown","ggplot2", "dplyr", "purrr", "remotes"))'
	- name: install BioConductor packages
	run: Rscript -e 'install.packages("BiocManager"); BiocManager::install(c("SingleCellExperiment", "scater", "scran")'
	- name: install GitHub packages
	run: Rscript -e 'remotes::install_github("jr-leary7/scLANE"); remotes::install_github("rhondabacher/scaffold")'

	- name: render README
	run: Rscript -e 'rmarkdown::render("README.Rmd", output_format = "md_document")'

	- name: commit rendered README
	run: \|
	git add README.md man/figures/README-*
	git commit -m "Recompiled README.Rmd" \|\| echo "No changes to commit"
	git push origin \|\| echo "No changes to commit"

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