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Added docs for bioconductor submission -- related to #96 #11

Added docs for bioconductor submission -- related to #96

Added docs for bioconductor submission -- related to #96 #11

# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Additional help taken from https://fromthebottomoftheheap.net/2020/04/30/rendering-your-readme-with-github-actions/
on:
push:
branches: dev
paths: [README.Rmd, render-README.yaml]
name: render-README
jobs:
render:
runs-on: macos-latest
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
steps:
- uses: actions/checkout@v3
- uses: r-lib/actions/setup-r@v2
with:
use-public-rspm: true
- uses: r-lib/actions/setup-r-dependencies@v2
- uses: r-lib/actions/setup-pandoc@v2
- name: install CRAN packages
run: Rscript -e 'install.packages(c("rmarkdown","ggplot2", "dplyr", "purrr", "remotes", "devtools", "BiocManager", "Seurat"), force = TRUE)'
- name: install BioConductor packages
run: Rscript -e 'BiocManager::install(c("SingleCellExperiment", "scater", "scran", "scuttle", "bluster"), force = TRUE)'
- name: install GitHub packages
run: Rscript -e 'remotes::install_github("jr-leary7/scLANE")'
- name: render README
run: Rscript -e 'rmarkdown::render("README.Rmd", output_format = "github_document", output_file = "README.md")'
- name: commit rendered README
run: |
git config --local user.name "jr-leary7"
git config --local user.email "jrleary@live.unc.edu"
git add README.md man/figures/README-*
git commit -m "Recompiled README.Rmd" || echo "No changes to commit"
git push origin || echo "No changes to commit"