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force install of quarto 1.4.309
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js2264 committed Aug 9, 2023
1 parent 379bbea commit 328070c
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3 changes: 2 additions & 1 deletion Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,8 @@ FROM bioconductor/bioconductor_docker:${BIOC_VERSION}
COPY . /opt/BiocBook

RUN apt-get update && apt-get install gdebi-core -y
RUN curl -LO https://quarto.org/download/latest/quarto-linux-amd64.deb && gdebi --non-interactive quarto-linux-amd64.deb
# RUN curl -LO https://quarto.org/download/latest/quarto-linux-amd64.deb && gdebi --non-interactive quarto-linux-amd64.deb
RUN curl -LO https://github.com/quarto-dev/quarto-cli/releases/download/v1.4.309/quarto-1.4.309-linux-amd64.deb && gdebi --non-interactive quarto-1.4.309-linux-amd64.deb
RUN Rscript -e 'install.packages("pak", repos = "https://r-lib.github.io/p/pak/devel/")'
RUN Rscript -e 'write(paste0("R_BIOC_VERSION=", gsub(".[0-9]*$$", "", as.character(packageVersion("BiocVersion")))), paste0(Sys.getenv("R_HOME"), "/etc/Renviron.site"), append = TRUE)'
RUN Rscript -e 'write(paste0("BIOCBOOK_PACKAGE=", gsub(".*: ", "", grep("Package: ", readLines("/opt/BiocBook/DESCRIPTION"), value = TRUE))), paste0(Sys.getenv("R_HOME"), "/etc/Renviron.site"), append = TRUE)'
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1 change: 1 addition & 0 deletions MyBook
Submodule MyBook added at a8c5ac

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