Deploying to gh-pages from @ c614bd7 🚀

js2264 · Sep 17, 2023 · 3c2ca50 · 3c2ca50
1 parent 3fd3765
commit 3c2ca50
Show file tree

Hide file tree

Showing 3 changed files with 7 additions and 7 deletions.
diff --git a/docs/devel/index.html b/docs/devel/index.html
@@ -245,7 +245,7 @@ <h1 class="title">Write, containerize and publish versioned Quarto books with Bi
 
 
 </header><p><img src="assets/cover.png" title="Write, containerize and publish versioned Quarto books with Bioconductor" class="quarto-cover-image img-fluid"></p>
-<p><strong>Package:</strong> BiocBook<br><strong>Authors:</strong> Jacques Serizay [aut, cre]<br><strong>Compiled:</strong> 2023-09-16<br><strong>Package version:</strong> 0.99.2<br><strong>R version:</strong> <b style="color:red;">R version 4.3.1 (2023-06-16)</b><br><strong>BioC version:</strong> <b style="color:red;">3.18</b><br><strong>License:</strong> MIT + file LICENSE<br></p>
+<p><strong>Package:</strong> BiocBook<br><strong>Authors:</strong> Jacques Serizay [aut, cre]<br><strong>Compiled:</strong> 2023-09-17<br><strong>Package version:</strong> 0.99.3<br><strong>R version:</strong> <b style="color:red;">R version 4.3.1 (2023-06-16)</b><br><strong>BioC version:</strong> <b style="color:red;">3.18</b><br><strong>License:</strong> MIT + file LICENSE<br></p>
 <section id="what-are-biocbooks" class="level1 unnumbered"><h1 class="unnumbered">What are <code>BiocBook</code>s?</h1>
 <p><code>BiocBook</code>s are <strong>package-based, versioned online books</strong> with a <strong>supporting <code>Docker</code> image</strong> for each book version.</p>
 <p>A <code>BiocBook</code> can be created by authors (e.g.&nbsp;<code>R</code> developers, but also scientists, teachers, communicators, …) who wish to:</p>
@@ -386,7 +386,7 @@ <h1 class="title">Write, containerize and publish versioned Quarto books with Bi
 <span><span class="co">##   collate  C</span></span>
 <span><span class="co">##   ctype    en_US.UTF-8</span></span>
 <span><span class="co">##   tz       Etc/UTC</span></span>
-<span><span class="co">##   date     2023-09-16</span></span>
+<span><span class="co">##   date     2023-09-17</span></span>
 <span><span class="co">##   pandoc   3.1.1 @ /usr/local/bin/ (via rmarkdown)</span></span>
 <span><span class="co">##  </span></span>
 <span><span class="co">##  ─ Packages ────────────────────────────────────────────────────────────────</span></span>
@@ -398,8 +398,8 @@ <h1 class="title">Write, containerize and publish versioned Quarto books with Bi
 <span><span class="co">##   BH              1.81.0-1  2023-01-22 [2] CRAN (R 4.3.1)</span></span>
 <span><span class="co">##   Biobase         2.61.0    2023-04-25 [2] Bioconductor</span></span>
 <span><span class="co">##   BiocBaseUtils   1.3.2     2023-07-18 [2] Bioconductor</span></span>
-<span><span class="co">##   BiocBook        0.99.2    2023-09-16 [1] Bioconductor</span></span>
-<span><span class="co">##   BiocCheck       1.37.14   2023-09-14 [2] Bioconductor</span></span>
+<span><span class="co">##   BiocBook        0.99.3    2023-09-17 [1] Bioconductor</span></span>
+<span><span class="co">##   BiocCheck       1.37.16   2023-09-15 [2] Bioconductor</span></span>
 <span><span class="co">##   BiocFileCache   2.9.1     2023-07-12 [2] Bioconductor</span></span>
 <span><span class="co">##   BiocGenerics    0.47.0    2023-04-25 [2] Bioconductor</span></span>
 <span><span class="co">##   BiocManager     1.30.22   2023-08-08 [2] CRAN (R 4.3.1)</span></span>
@@ -561,7 +561,7 @@ <h1 class="title">Write, containerize and publish versioned Quarto books with Bi
 <span><span class="co">##   yesno           0.1.2     2020-07-10 [2] CRAN (R 4.3.1)</span></span>
 <span><span class="co">##   zip             2.3.0     2023-04-17 [2] CRAN (R 4.3.1)</span></span>
 <span><span class="co">##  </span></span>
-<span><span class="co">##   [1] /tmp/RtmpahZ0og/Rinsta347210a9</span></span>
+<span><span class="co">##   [1] /tmp/RtmpbcdJsp/Rinsta32c9cdd9</span></span>
 <span><span class="co">##   [2] /usr/local/lib/R/site-library</span></span>
 <span><span class="co">##   [3] /usr/local/lib/R/library</span></span>
 <span><span class="co">##  </span></span>

diff --git a/docs/devel/pages/Chapter-1.html b/docs/devel/pages/Chapter-1.html
@@ -364,7 +364,7 @@ <h1 class="title">
 </section><section id="so-what-packages-can-i-use" class="level2" data-number="1.4"><h2 data-number="1.4" class="anchored" data-anchor-id="so-what-packages-can-i-use">
 <span class="header-section-number">1.4</span> So what packages can I use?</h2>
 <p>Any package that has been released in the Bioconductor version you are using (in this book version, this is 3.18.0).</p>
-<p>The <code>BiocBaseUtils</code> package is available in Bioconductor since <code>3.16</code>, while the <code>BiocHail</code> package was only made available in <code>3.17</code>. <code>CuratedAtlasQueryR</code> has recently been accepted in <code>3.18</code> (current <code>devel</code>, on Sat Sep 16 09:52:04 2023). Let’s check this!</p>
+<p>The <code>BiocBaseUtils</code> package is available in Bioconductor since <code>3.16</code>, while the <code>BiocHail</code> package was only made available in <code>3.17</code>. <code>CuratedAtlasQueryR</code> has recently been accepted in <code>3.18</code> (current <code>devel</code>, on Sun Sep 17 08:06:12 2023). Let’s check this!</p>
 <div class="cell" data-layout-align="center">
 <div class="sourceCode" id="cb3"><pre class="downlit sourceCode r code-with-copy"><code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/packageDescription.html">packageVersion</a></span><span class="op">(</span><span class="st">"BiocVersion"</span><span class="op">)</span></span>
 <span><span class="co">##  [1] '3.18.0'</span></span>

diff --git a/docs/devel/search.json b/docs/devel/search.json
@@ -60,7 +60,7 @@
     "href": "pages/Chapter-1.html#so-what-packages-can-i-use",
     "title": "\n1  BiocBook versioning system\n",
     "section": "\n1.4 So what packages can I use?",
-    "text": "1.4 So what packages can I use?\nAny package that has been released in the Bioconductor version you are using (in this book version, this is 3.18.0).\nThe BiocBaseUtils package is available in Bioconductor since 3.16, while the BiocHail package was only made available in 3.17. CuratedAtlasQueryR has recently been accepted in 3.18 (current devel, on Sat Sep 16 09:52:04 2023). Let’s check this!\n\npackageVersion(\"BiocVersion\")\n##  [1] '3.18.0'\nBiocManager::available(\"BiocBaseUtils\")\n##  [1] \"BiocBaseUtils\"\nBiocManager::available(\"BiocHail\")\n##  [1] \"BiocHail\"\nBiocManager::available(\"CuratedAtlasQueryR\")\n##  [1] \"CuratedAtlasQueryR\""
+    "text": "1.4 So what packages can I use?\nAny package that has been released in the Bioconductor version you are using (in this book version, this is 3.18.0).\nThe BiocBaseUtils package is available in Bioconductor since 3.16, while the BiocHail package was only made available in 3.17. CuratedAtlasQueryR has recently been accepted in 3.18 (current devel, on Sun Sep 17 08:06:12 2023). Let’s check this!\n\npackageVersion(\"BiocVersion\")\n##  [1] '3.18.0'\nBiocManager::available(\"BiocBaseUtils\")\n##  [1] \"BiocBaseUtils\"\nBiocManager::available(\"BiocHail\")\n##  [1] \"BiocHail\"\nBiocManager::available(\"CuratedAtlasQueryR\")\n##  [1] \"CuratedAtlasQueryR\""
   },
   {
     "objectID": "pages/Chapter-2.html#register-a-github-account-in-r",