final vignette update

jsilve24 · May 18, 2024 · c53a162 · c53a162
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Showing 6 changed files with 5 additions and 5 deletions.
diff --git a/vignettes/introduction-to-fido.Rmd b/vignettes/introduction-to-fido.Rmd
@@ -280,7 +280,7 @@ p <- plot(priors, par="Lambda")
 p + ggplot2::xlim(c(-10, 10))  
 ```
 
-![](figure/unnamed-chunk-7-1.png)
+![](pibble-priors.png)
 
 This looks fairly reasonable to me. So I am going to go ahead and 
 fit the model with data. `fido` provides a helper method called `refit` 
@@ -322,7 +322,7 @@ object as in our `priors` object].
 ppc(posterior) + ggplot2::coord_cartesian(ylim=c(0, 30000))
 ```
 
-![](figure/unnamed-chunk-10-1.png)
+![](pibble-ppc.png)
 
 There are a few things to note about this plot. First, when zoomed out like this
 it looks it is hard to make much of it. This is a fairly large dataset we are 
@@ -353,7 +353,7 @@ than the other.
 ppc(posterior, from_scratch=TRUE) +ggplot2::coord_cartesian(ylim=c(0, 30000))
 ```
 
-![](figure/unnamed-chunk-12-1.png)
+![](pibble-ppc-sum.png)
 
 ```r
 ppc_summary(posterior, from_scratch=TRUE)
@@ -376,7 +376,7 @@ plot(posterior, par="Lambda", focus.coord = focus, focus.cov = rownames(X)[2:4])
 #> Adding another scale for colour, which will replace the existing scale.
 ```
 
-![](figure/unnamed-chunk-13-1.png)
+![](pibble-CD-clr.png)
 
 The first, and most obvious ting to notice is that the covariate `age` has pretty 
 much no effect at all, whatever effect it may have is incredibly weak. So 
@@ -424,7 +424,7 @@ plot(posterior, par="Lambda", focus.coord = focus, focus.cov = rownames(X)[2])
 #> Adding another scale for colour, which will replace the existing scale.
 ```
 
-![](figure/unnamed-chunk-14-1.png)
+![](pibble-posterior-summary.png)
 
 
 # More Technical Details 

diff --git a/vignettes/figure/unnamed-chunk-13-1.png → vignettes/pibble-CD-clr.png b/vignettes/figure/unnamed-chunk-13-1.png → vignettes/pibble-CD-clr.png
diff --git a/vignettes/figure/unnamed-chunk-14-1.png → vignettes/pibble-posterior-summary.png b/vignettes/figure/unnamed-chunk-14-1.png → vignettes/pibble-posterior-summary.png
diff --git a/vignettes/figure/unnamed-chunk-12-1.png → vignettes/pibble-ppc-sum.png b/vignettes/figure/unnamed-chunk-12-1.png → vignettes/pibble-ppc-sum.png
diff --git a/vignettes/figure/unnamed-chunk-10-1.png → vignettes/pibble-ppc.png b/vignettes/figure/unnamed-chunk-10-1.png → vignettes/pibble-ppc.png
diff --git a/vignettes/figure/unnamed-chunk-7-1.png → vignettes/pibble-priors.png b/vignettes/figure/unnamed-chunk-7-1.png → vignettes/pibble-priors.png