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JugLab

GitHub for the JugLab

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  1. n2v n2v Public

    This is the implementation of Noise2Void training.

    Python 427 115

  2. EmbedSeg EmbedSeg Public

    Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images

    Python 112 23

  3. FourierImageTransformer FourierImageTransformer Public

    Fourier Image Transformer (FIT) can solve relevant image analysis tasks in Fourier space.

    Python 97 13

  4. pn2v pn2v Public

    This is our implementation of Probabilistic Noise2Void

    Python 75 11

  5. DenoiSeg DenoiSeg Public

    Joint training of denoising and segmentation.

    Jupyter Notebook 70 21

  6. PPN2V PPN2V Public

    Code Implementation for the publication "Fully Unsupervised Probabilistic Noise2Void"

    Python 56 9

Repositories

Showing 10 of 91 repositories
  • MicroSplit Public Forked from ashesh-0/Disentangle

    Experiments for MicroSplit were done using this code.

    juglab/MicroSplit’s past year of commit activity
    Jupyter Notebook 0 2 0 0 Updated Feb 5, 2025
  • uSplit Public
    juglab/uSplit’s past year of commit activity
    Python 8 MIT 5 3 1 Updated Feb 4, 2025
  • MultiOmicsCellSim Public

    Cell Simulator to map parametrical distributions into various modalities

    juglab/MultiOmicsCellSim’s past year of commit activity
    Jupyter Notebook 2 GPL-3.0 0 0 1 Updated Feb 4, 2025
  • featureforest Public

    A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier

    juglab/featureforest’s past year of commit activity
    Python 13 BSD-3-Clause 0 2 0 Updated Jan 31, 2025
  • n2v Public

    This is the implementation of Noise2Void training.

    juglab/n2v’s past year of commit activity
    Python 427 115 24 (1 issue needs help) 3 Updated Dec 18, 2024
  • cellpose-bmz-wrapper Public

    A wrapper to pack cellpose model for bioimage model zoo

    juglab/cellpose-bmz-wrapper’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Dec 6, 2024
  • labkit-ui Public

    Advanced Tool for Labeling And Segmentation

    juglab/labkit-ui’s past year of commit activity
    Java 34 BSD-2-Clause 21 59 3 Updated Oct 21, 2024
  • MicroSSIM Public

    Range Invariant SSIM

    juglab/MicroSSIM’s past year of commit activity
    Jupyter Notebook 1 BSD-3-Clause 0 1 0 Updated Sep 21, 2024
  • juglab/labkit-pixel-classification’s past year of commit activity
    Java 6 BSD-2-Clause 6 2 0 Updated Aug 29, 2024
  • juglab/bioimageio-uploader’s past year of commit activity
    Svelte 0 2 0 0 Updated Aug 28, 2024

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