tests run through

jungmannlab · Sep 25, 2024 · 34d545a · 34d545a
1 parent fe3f401
commit 34d545a
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Showing 2 changed files with 3 additions and 5 deletions.
diff --git a/picasso_workflow/analyse.py b/picasso_workflow/analyse.py
@@ -1362,9 +1362,7 @@ def nneighbor(self, i, parameters, results):
             alldist = np.sort(alldist, axis=1)
             logger.debug("sorted all distances")
         else:
-            k = max([
-                parameters['nth_NN'] + 3,
-                parameters["nth_rdf"] + 3])
+            k = max([parameters["nth_NN"] + 3, parameters["nth_rdf"] + 3])
             tree = KDTree(points)
             alldist, indices = tree.query(points, k=k)
             alldist = np.sort(alldist, axis=1)
@@ -2271,7 +2269,6 @@ def ripleysk(self, i, parameters, results):
                     ),
                 )
             )
-        )
 
         if isinstance(parameters["fp_combined_locs"], list):
             fp_combined_locs = parameters["fp_combined_locs"][0]

diff --git a/picasso_workflow/tests/test_picasso_outpost.py b/picasso_workflow/tests/test_picasso_outpost.py
@@ -251,6 +251,7 @@ def test_06c_picked_locs(self):
         gold_locs = picasso_outpost.picked_locs(
             locs, info, centers, pick_diameter=0.5
         )
-        ngold_locs = np.sum([len(lcs) for lcs in gold_locs])
+        print(gold_locs)
+        ngold_locs = len(gold_locs)
 
         assert ngold_locs == len(centers) * info[0]["Frames"]