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To guide group members having a better sense about the project layout, here we briefly introduce the specific purposes of the dir system. The layout of dirs is based on the idea borrowed from ProjectTemplate.
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The guideline for the collaborative workflow.
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Check out progress and things to-do and throw ideas via the wiki page.
git clone git@github.com:jyanglab/seedbarcode.git
Make sure to get the above dependencies installed first and export them in your $PATH. And then cd to the directory that you just cloned.
chmod +x seedbarcode.py
seedbarcode.py -h
Note: will print all the columns in the csv file:
seedbarcode.py -i input_test.csv -t avery-5167 -f 12 -o output.ps
Note: will only print the first column of the csv file:
seedbarcode.py -i input_test.csv -t avery-5167 -f 12 -o output.ps
This is an ongoing research project. It was intended for internal lab usage. It has not been extensively tested. Use at your own risk. It is a free and open source software, licensed under GPLv3.