Feat - search for taxa if not found in the current group (#4318)

* Feat - search for taxa if not found in the current group

* Update bims/static/js/taxa_management/taxa_management.js

bims/api_views/taxon.py

@@ -444,6 +444,8 @@ def get_taxa_by_parameters(request):
         family_name = request.GET.get('family', '')
         genus_name = request.GET.get('genus', '')
         species_name = request.GET.get('species', '')
+        summary_only = request.GET.get('summary', 'False') == 'True'
+        taxon_group_ids = None
 
         authors = []
         if author_names:
@@ -474,19 +476,26 @@ def get_taxa_by_parameters(request):
         id = request.GET.get('id', '')
         if id:
             return Taxonomy.objects.filter(id=id)
-        if not taxon_group_id:
-            raise Http404('Missing taxon group id')
-        try:
-            taxon_group = TaxonGroup.objects.get(id=taxon_group_id)
-        except TaxonGroup.DoesNotExist:
-            raise Http404('Taxon group does not exist')
 
-        taxon_group_ids = TaxaList.get_descendant_group_ids(
-            taxon_group)
-        taxon_list = Taxonomy.objects.filter(
-            taxongroup__id__in=taxon_group_ids,
-            taxongrouptaxonomy__is_rejected=False,
-        ).distinct().order_by('canonical_name')
+        if taxon_group_id:
+            try:
+                taxon_group = TaxonGroup.objects.get(id=taxon_group_id)
+            except TaxonGroup.DoesNotExist:
+                raise Http404('Taxon group does not exist')
+        else:
+            taxon_group = None
+
+        if taxon_group:
+            taxon_group_ids = TaxaList.get_descendant_group_ids(
+                taxon_group)
+            taxon_list = Taxonomy.objects.filter(
+                taxongroup__id__in=taxon_group_ids,
+                taxongrouptaxonomy__is_rejected=False,
+            ).distinct().order_by('canonical_name')
+        else:
+            taxon_list = Taxonomy.objects.filter(
+                taxongrouptaxonomy__is_rejected=False,
+            ).distinct().order_by('canonical_name')
 
         if len(authors) > 0:
             taxon_list = taxon_list.filter(
@@ -568,15 +577,20 @@ def get_taxa_by_parameters(request):
             try:
                 validated = ast.literal_eval(validated.replace('/', ''))
                 if not validated:
-                    taxon_list = taxon_list.filter(
-                        taxongrouptaxonomy__is_validated=False,
-                        taxongrouptaxonomy__taxongroup__in=taxon_group_ids
-                    )
+                    validated_filters = {
+                        'taxongrouptaxonomy__is_validated': False,
+                    }
                 else:
-                    taxon_list = taxon_list.filter(
-                        taxongrouptaxonomy__is_validated=True,
-                        taxongrouptaxonomy__taxongroup__in=taxon_group_ids
-                    )
+                    validated_filters = {
+                        'taxongrouptaxonomy__is_validated': True,
+                    }
+                if taxon_group_ids:
+                    validated_filters[
+                        'taxongrouptaxonomy__taxongroup__in'
+                    ] = taxon_group_ids
+                taxon_list = taxon_list.filter(
+                    **validated_filters
+                )
             except ValueError:
                 pass
         if is_gbif:
@@ -605,7 +619,7 @@ def get_taxa_by_parameters(request):
                     )
             except ValueError:
                 pass
-        if order:
+        if order and not summary_only:
             if 'total_records' in order:
                 taxon_list = taxon_list.annotate(
                     total_records=Count('biologicalcollectionrecord')
@@ -667,6 +681,14 @@ def get_paginated_response(self, data):
 
     def get(self, request, *args):
         taxon_list = self.get_taxa_by_parameters(request)
+        summary_only = request.GET.get('summary', 'False') == 'True'
+
+        if summary_only:
+            return Response(list(TaxonGroupTaxonomy.objects.filter(
+                taxonomy__in=taxon_list
+            ).values('taxongroup', 'taxongroup__name').annotate(
+                total=Count('taxongroup'))))
+
         self.pagination_class.page_size = request.GET.get('page_size', 20)
         page = self.paginate_queryset(taxon_list)
         validated = ast.literal_eval(request.GET.get('validated', 'True'))

bims/migrations/0447_alter_sitesetting_park_wfs_attribute_key_and_more.py

@@ -0,0 +1,38 @@
+# Generated by Django 4.2.16 on 2024-10-18 16:27
+
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ('bims', '0446_sitesetting_park_layer'),
+    ]
+
+    operations = [
+        migrations.AlterField(
+            model_name='sitesetting',
+            name='park_wfs_attribute_key',
+            field=models.CharField(blank=True, default='', help_text='Park attribute key', max_length=200),
+        ),
+        migrations.AlterField(
+            model_name='taxongrouptaxonomy',
+            name='is_rejected',
+            field=models.BooleanField(db_index=True, default=False),
+        ),
+        migrations.AlterField(
+            model_name='taxongrouptaxonomy',
+            name='is_validated',
+            field=models.BooleanField(db_index=True, default=False),
+        ),
+        migrations.AlterField(
+            model_name='taxonomy',
+            name='canonical_name',
+            field=models.CharField(blank=True, db_index=True, max_length=200, null=True, verbose_name='Canonical Name'),
+        ),
+        migrations.AlterField(
+            model_name='taxonomyupdateproposal',
+            name='canonical_name',
+            field=models.CharField(blank=True, db_index=True, max_length=200, null=True, verbose_name='Canonical Name'),
+        ),
+    ]

bims/models/taxon_group_taxonomy.py

@@ -14,11 +14,13 @@ class TaxonGroupTaxonomy(models.Model):
     )
 
     is_validated = models.BooleanField(
-        default=False
+        default=False,
+        db_index=True
     )
 
     is_rejected = models.BooleanField(
-        default=False
+        default=False,
+        db_index=True
     )
 
     endemism = models.ForeignKey(

bims/models/taxonomy.py

@@ -124,7 +124,8 @@ class AbstractTaxonomy(AbstractValidation):
         verbose_name='Canonical Name',
         max_length=200,
         null=True,
-        blank=True
+        blank=True,
+        db_index=True
     )
 
     legacy_canonical_name = models.CharField(

bims/static/js/taxa_management/taxa_management.js

@@ -236,7 +236,45 @@ export const taxaManagement = (() => {
         return luminance < 0.5;
     }
 
+    const findTaxaWithoutTaxonGroup = (url) => {
+        let urlObj = new URL(url, window.location.origin);
+        let params = new URLSearchParams(urlObj.search);
+
+        params.delete('taxonGroup');
+        let taxon = params.get('taxon');
+
+        urlObj.search = params.toString();
+
+        let updatedUrl = urlObj.toString();
+        if (taxon) {
+            // Only search taxa if there is search string
+            $.ajax({
+                url: updatedUrl + '&summary=True',
+                dataType: 'json',
+                success: function (data) {
+                    if (data.length > 0) {
+                        let warningDivs = $('<div>')
+                        for (let i=0; i < data.length; i++) {
+                            let warningDiv = $('<div>');
+                            warningDiv.append(
+                                `<div class="alert alert-warning" role="alert" style="cursor: pointer">
+                                    ${data[i].total} taxon found in ${data[i].taxongroup__name}. Click here to view the taxon group.
+                                </div>`
+                            )
+                            warningDiv.on('click', function () {
+                                $('#sortable').find(`[data-id="${data[i].taxongroup}"]`).click();
+                            })
+                            warningDivs.append(warningDiv);
+                        }
+                        $('.footer-warning').html(warningDivs)
+                    }
+                }
+            });
+        }
+    }
+
     const getTaxaList = (url) => {
+        $('.footer-warning').html('');
         taxaUrlList = url;
         let urlParams = new URLSearchParams(window.location.search);
         let initialPage = urlParams.get('page') ? parseInt(urlParams.get('page')) : 1;
@@ -245,6 +283,7 @@ export const taxaManagement = (() => {
         let initialSortBy = urlParams.get('o') ? (urlParams.get('o').includes('-') ? '-' : '') : '';
         let initialStart = (initialPage - 1) * 20;
 
+
         $('.download-button-container').show();
         let tableInitialized = false;
 
@@ -363,6 +402,11 @@ export const taxaManagement = (() => {
                             $('#add-taxon-btn').show();
                         }
 
+                        if (response.count === 0) {
+                            // Find without taxon group id
+                            findTaxaWithoutTaxonGroup(url)
+                        }
+
                         $.each(response.results, function (index, data) {
                             let name = data.canonical_name || data.scientific_name;
                             let taxonomicStatusHTML = (data.taxonomic_status && data.taxonomic_status.toLowerCase() === 'synonym') ?

bims/static/js/taxa_management/taxa_sidebar.js

@@ -315,7 +315,6 @@ export const taxaSidebar = (() => {
             },
             error: function (data) {
                 console.log("error");
-                console.log(data);
                 $removeModuleBtn.html('Remove Module');
                 $removeModuleBtn.attr('disabled', false);
                 // Hide the processing modal

bims/templates/taxa_management.html

@@ -314,6 +314,9 @@ <h2>Taxon Management</h2>
                             </thead>
                             <tbody id="taxa-list"></tbody>
                         </table>
+                    </div>
+                    <div class="footer-warning">
+
                     </div>
                     <div class="pagination-centered" style="display:none">
                         <ul class="pagination">