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@kassonlab

Kasson laboratory

Kasson laboratory software repositories

Popular repositories Loading

  1. gmxapi gmxapi Public

    (outdated) fork of https://gitlab.com/gromacs/gromacs

    C++ 53 13

  2. gmxapi-tutorials gmxapi-tutorials Public

    Python examples and tutorial material for gmxapi 0.3 on GROMACS 2022

    Jupyter Notebook 9 4

  3. covid19-epi covid19-epi Public

    Individual-based epidemiological modeling for COVID-19

    C 5 5

  4. positionalmi positionalmi Public

    code for calculation and analysis of positional mutual information

    Python 2 1

  5. gmxapi-scripts gmxapi-scripts Public

    Python 2 1

  6. copernicus copernicus Public

    Forked from gromacs/copernicus

    Copernicus

    Python 1 1

Repositories

Showing 10 of 33 repositories
  • Jamel Public
    C++ 0 GPL-3.0 0 0 0 Updated Apr 24, 2025
  • airflowHPC Public Forked from ejjordan/airflowHPC
    Python 0 2 0 0 Updated Apr 15, 2025
  • Icy_Bioimager_IAV_NP_Nuclear_Intensity_analysis Public
    0 0 0 0 Updated Jan 3, 2025
  • single_particle_event_analysis Public

    Script for analysis of single-viral particle fusion event videos. Videos have to be pre-analysed in Fiji Spot Intensity Analysis plugin and the resulting .csv file is used for this analysis.

    Jupyter Notebook 0 0 0 0 Updated Jan 3, 2025
  • micrograph-spot-analysis Public
    MATLAB 0 LGPL-3.0 0 0 0 Updated Nov 2, 2024
  • covid19-epi Public

    Individual-based epidemiological modeling for COVID-19

    C 5 LGPL-2.1 5 1 2 Updated Sep 29, 2023
  • brer-md Public

    Python package for running bias-resampling ensemble refinement (BRER) simulations.

    Python 1 LGPL-2.1 0 18 (7 issues need help) 1 Updated May 9, 2023
  • gmxapi Public

    (outdated) fork of https://gitlab.com/gromacs/gromacs

    C++ 53 13 93 2 Updated Apr 27, 2023
  • coronavirus-chimera-prediction Public

    Code for generating and predicting coronavirus chimeras

    Python 0 GPL-3.0 0 0 1 Updated Feb 1, 2023
  • mRMR-DEER Public

    selection of residues for DEER spectroscopy using mRMR feature selection

    Python 0 2 0 0 Updated Jan 4, 2023
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