Merge pull request #179 from jdblischak/codecov-token

Use CODECOV_TOKEN to fix code coverage uploads

.github/workflows/test-coverage.yaml

@@ -2,11 +2,12 @@
 # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
 on:
   push:
-    branches: [main, master]
   pull_request:
-    branches: [main, master]
+  workflow_dispatch:
 
-name: test-coverage
+name: test-coverage.yaml
+
+permissions: read-all
 
 jobs:
   test-coverage:
@@ -23,23 +24,34 @@ jobs:
 
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
-          extra-packages: any::covr
+          extra-packages: any::covr, any::xml2
           needs: coverage
 
       - name: Test coverage
         run: |
-          covr::codecov(
+          cov <- covr::package_coverage(
             quiet = FALSE,
             clean = FALSE,
             install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
           )
+          covr::to_cobertura(cov)
         shell: Rscript {0}
 
+      - uses: codecov/codecov-action@v4
+        if: github.event.repository.fork == false
+        with:
+          # Fail if error if not on PR, or if on PR and token is given
+          fail_ci_if_error: ${{ github.event_name != 'pull_request' || secrets.CODECOV_TOKEN }}
+          file: ./cobertura.xml
+          plugin: noop
+          disable_search: true
+          token: ${{ secrets.CODECOV_TOKEN }}
+
       - name: Show testthat output
         if: always()
         run: |
           ## --------------------------------------------------------------------
-          find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true
+          find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true
         shell: bash
 
       - name: Upload test results

README.md

@@ -2,7 +2,7 @@
 
 <!-- badges: start -->
 [![CRAN status](https://www.r-pkg.org/badges/version/gsDesign)](https://CRAN.R-project.org/package=gsDesign)
-[![Codecov test coverage](https://codecov.io/gh/keaven/gsDesign/branch/master/graph/badge.svg)](https://app.codecov.io/gh/keaven/gsDesign?branch=master)
+[![Codecov test coverage](https://codecov.io/gh/keaven/gsDesign/graph/badge.svg)](https://app.codecov.io/gh/keaven/gsDesign)
 [![pkgdown](https://github.com/keaven/gsDesign/actions/workflows/pkgdown.yaml/badge.svg)](https://github.com/keaven/gsDesign/actions/workflows/pkgdown.yaml)
 [![R-CMD-check](https://github.com/keaven/gsDesign/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/keaven/gsDesign/actions/workflows/R-CMD-check.yaml)
 [![shinyapps.io](https://img.shields.io/badge/Shiny-shinyapps.io-blue)](https://rinpharma.shinyapps.io/gsdesign/)