naturalneighbor install to hippunfold_deps

khanlab · Jun 26, 2024 · d85d5a6 · d85d5a6
1 parent 517b9f7
commit d85d5a6
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diff --git a/hippunfold/workflow/rules/warps.smk b/hippunfold/workflow/rules/warps.smk
@@ -225,6 +225,8 @@ rule create_warps_hipp:
             hemi="{hemi}",
             suffix="create_warps-hipp.txt"
         ),
+    container:
+        config["singularity"]["autotop"]
     script:
         "../scripts/create_warps.py"
 
@@ -349,6 +351,8 @@ rule create_warps_dentate:
             hemi="{hemi}",
             suffix="create_warps-dentate.txt"
         ),
+    container:
+        config["singularity"]["autotop"]
     script:
         "../scripts/create_warps.py"
 

diff --git a/pyproject.toml b/pyproject.toml
@@ -12,7 +12,6 @@ appdirs = "^1.4.4"
 Jinja2 = "^3.0.3"
 pygraphviz = "1.7"
 Pygments = "^2.10.0"
-naturalneighbor = "0.2.1"
 
 
 [tool.poetry.dev-dependencies]