felled missing info

khanlab · Jun 11, 2024 · f029d5f · f029d5f
1 parent e65e1e9
commit f029d5f
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Showing 2 changed files with 17 additions and 1 deletion.
diff --git a/hippunfold/config/snakebids.yml b/hippunfold/config/snakebids.yml
@@ -387,6 +387,10 @@ template_based_segmentation:
   MBMv3:
     hemi:
       - R
+  ABAv3:
+    hemi:
+      - R
+      - L
 
 
 template_files:
@@ -485,7 +489,10 @@ tissue_atlas_mapping:
     dg: 209
     srlm: 227
     cyst: 228
-
+  mouse: 
+    dg: 6
+    srlm: 7
+    cyst: 8
 
 
 rigid_reg_template: False

diff --git a/hippunfold/resources/label_lut/desc-subfields_atlas-mouse_dseg.tsv b/hippunfold/resources/label_lut/desc-subfields_atlas-mouse_dseg.tsv
@@ -0,0 +1,9 @@
+index	name	abbreviation
+1	subiculum	Sub
+2	CA1	CA1
+3	CA2	CA2
+4	CA3	CA3
+5	CA4	CA4
+6	dentate_gyrus	DG
+7	SRLM	SRLM
+8	cysts	Cyst
-Original file line number
+Diff line change
@@ Expand Up / @@ -387,6 +387,10 @@ template_based_segmentation: @@
       MBMv3:
         hemi:
           - R
+      ABAv3:
+        hemi:
+          - R
+          - L
     template_files:
@@ Expand Down Expand Up / @@ -485,7 +489,10 @@ tissue_atlas_mapping: @@
         dg: 209
         srlm: 227
         cyst: 228
+      mouse:
+        dg: 6
+        srlm: 7
+        cyst: 8
     rigid_reg_template: False
@@ Expand Down @@