Version 1.0.2

• Revised vignettes figures for the HTML tutorial. Figure sizes modified to be more uniform.

Version published on CRAN, 4 March 2021: https://cran.r-project.org/web/packages/pagoda2/index.html

Version 1.0.1

Added

• Returned copy constructor

Changed

• Fixed read10xMatrix() function
• Updated Dockerfile
• Fixed 'batch' param in Pagoda2 constructor

Version 1.0.1 published on CRAN on Feb 23 2021, https://cran.r-project.org/web/packages/pagoda2/index.html

Version 1.0.0

Pagoda2 is now on CRAN, and all binaries are built: https://cran.r-project.org/web/packages/pagoda2/index.html

• The classes Pagoda2() and p2ViewPagodaApp() are now R6 classes; note pagoda2WebApp() is still a reference class as it depends on Rook
• Vignettes revised
• Use p2data and drat to install PBMC data for pagoda2 vignettes and examples. This was largely due to the size of the data and CRAN rules. Refer to https://github.com/kharchenkolab/p2data & https://github.com/kharchenkolab/drat
• revise message() spacing for verbose statements
• various changes for CRAN, e.g. par(), removing calls to installed.packages(), etc.
• p2app4conos() moved to conos
• more detailed roxygen2 docs

Version 0.1.4

• added p2app4conos() for rendering Conos to pagoda2 application
• README edits
• vignettes edits

Version 0.1.3

• Makefile.win, Makevars.win
• Made OpenMP headers conditional
• Now should (natively) install on Mac OS for all users

Version 0.1.2

Changed
-- vignettes revisions
-- install pagoda2 in one go via biocViews
-- log10 scaling for plots
-- windows installation
-- updates for CRAN
-- DESCRIPTION edits