update

kingaa · Apr 1, 2024 · 5a2814c · 5a2814c
1 parent d8796fb
commit 5a2814c
Show file tree

Hide file tree

Showing 6 changed files with 32 additions and 47 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,8 +1,8 @@
 Package: circumstance
 Type: Package
 Title: pomp parallelized
-Version: 0.0.10.0
-Date: 2023-07-17
+Version: 0.0.10.1
+Date: 2024-04-01
 Maintainer: Aaron A. King <kingaa@umich.edu>
 Description: Helper functions for parallelizing pomp computations.
 Authors@R: c(person(given=c("Aaron","A."),family="King",
@@ -18,7 +18,7 @@ BugReports: https://github.com/kingaa/circumstance/issues/
 Contact: kingaa at umich dot edu
 Encoding: UTF-8
 Roxygen: list(roclets = c("collate", "namespace", "rd"))
-RoxygenNote: 7.2.3
+RoxygenNote: 7.3.1
 Collate: 
     'package.R'
     'continue.R'

diff --git a/man/circumstance-package.Rd b/man/circumstance-package.Rd
diff --git a/tests/mif2.Rout.save b/tests/mif2.Rout.save
@@ -1,6 +1,6 @@
 
-R version 4.3.1 (2023-06-16) -- "Beagle Scouts"
-Copyright (C) 2023 The R Foundation for Statistical Computing
+R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
+Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu (64-bit)
 
 R is free software and comes with ABSOLUTELY NO WARRANTY.
@@ -25,14 +25,6 @@ Type 'q()' to quit R.
 > library(circumstance)
 Loading required package: pomp
 
-Welcome to pomp!
-
-As of version 4.6, no user-visible pomp function has a name that
-includes a dot ('.'). Function names have been changed to replace the
-dot with an underscore ('_'). For more information, see the pomp blog:
-https://kingaa.github.io/pomp/blog.html.
-
-
 Attaching package: ‘circumstance’
 
 The following objects are masked from ‘package:pomp’:
@@ -82,7 +74,8 @@ Loading required package: future
 +   facet_grid(name~.,scales="free_y")+
 +   theme_bw()
 Warning message:
-Removed 3 rows containing missing values (`geom_line()`). 
+Removed 3 rows containing missing values or values outside the scale range
+(`geom_line()`). 
 > 
 > mfs |>
 +   as.data.frame() |>
@@ -112,7 +105,8 @@ Removed 3 rows containing missing values (`geom_line()`).
 +   facet_grid(name~.,scales="free_y")+
 +   theme_bw()
 Warning message:
-Removed 3 rows containing missing values (`geom_line()`). 
+Removed 3 rows containing missing values or values outside the scale range
+(`geom_line()`). 
 > 
 > mfs |>
 +   mif2(Nmif=5) |>
@@ -142,7 +136,8 @@ Removed 3 rows containing missing values (`geom_line()`).
 +   facet_grid(name~.,scales="free_y")+
 +   theme_bw()
 Warning message:
-Removed 3 rows containing missing values (`geom_line()`). 
+Removed 3 rows containing missing values or values outside the scale range
+(`geom_line()`). 
 > 
 > mfs |>
 +   lapply(as,"pfilterd_pomp") |>
@@ -160,7 +155,8 @@ Removed 3 rows containing missing values (`geom_line()`).
 +   facet_grid(name~.,scales="free_y")+
 +   theme_bw()
 Warning message:
-Removed 3 rows containing missing values (`geom_line()`). 
+Removed 3 rows containing missing values or values outside the scale range
+(`geom_line()`). 
 > 
 > dev.off()
 null device 

diff --git a/tests/pfilter.Rout.save b/tests/pfilter.Rout.save
@@ -1,6 +1,6 @@
 
-R version 4.3.1 (2023-06-16) -- "Beagle Scouts"
-Copyright (C) 2023 The R Foundation for Statistical Computing
+R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
+Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu (64-bit)
 
 R is free software and comes with ABSOLUTELY NO WARRANTY.
@@ -25,14 +25,6 @@ Type 'q()' to quit R.
 > library(circumstance)
 Loading required package: pomp
 
-Welcome to pomp!
-
-As of version 4.6, no user-visible pomp function has a name that
-includes a dot ('.'). Function names have been changed to replace the
-dot with an underscore ('_'). For more information, see the pomp blog:
-https://kingaa.github.io/pomp/blog.html.
-
-
 Attaching package: ‘circumstance’
 
 The following objects are masked from ‘package:pomp’:

diff --git a/tests/plot_matrix.Rout.save b/tests/plot_matrix.Rout.save
@@ -1,6 +1,6 @@
 
-R version 4.3.1 (2023-06-16) -- "Beagle Scouts"
-Copyright (C) 2023 The R Foundation for Statistical Computing
+R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
+Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu (64-bit)
 
 R is free software and comes with ABSOLUTELY NO WARRANTY.
@@ -33,14 +33,6 @@ The following objects are masked from ‘package:base’:
 > library(circumstance)
 Loading required package: pomp
 
-Welcome to pomp!
-
-As of version 4.6, no user-visible pomp function has a name that
-includes a dot ('.'). Function names have been changed to replace the
-dot with an underscore ('_'). For more information, see the pomp blog:
-https://kingaa.github.io/pomp/blog.html.
-
-
 Attaching package: ‘circumstance’
 
 The following objects are masked from ‘package:pomp’:

diff --git a/tests/pmcmc.Rout.save b/tests/pmcmc.Rout.save
@@ -1,6 +1,6 @@
 
-R version 4.3.1 (2023-06-16) -- "Beagle Scouts"
-Copyright (C) 2023 The R Foundation for Statistical Computing
+R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
+Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu (64-bit)
 
 R is free software and comes with ABSOLUTELY NO WARRANTY.
@@ -25,14 +25,6 @@ Type 'q()' to quit R.
 > library(circumstance)
 Loading required package: pomp
 
-Welcome to pomp!
-
-As of version 4.6, no user-visible pomp function has a name that
-includes a dot ('.'). Function names have been changed to replace the
-dot with an underscore ('_'). For more information, see the pomp blog:
-https://kingaa.github.io/pomp/blog.html.
-
-
 Attaching package: ‘circumstance’
 
 The following objects are masked from ‘package:pomp’: