pfb2019_rna1

The reads belong to the following samples:

Red-light pulse samples:
SRR9659514
SRR9659515
SRR9659516

Far-red pulse samples:
SRR9659517
SRR9659518
SRR9659519

Before you submit a pull request, run these git commands to sync your repo with upstream

git fetch upstream
git checkout master
git merge upstream/master
git push

Then go to your fork and create a pull request.

Name		Name	Last commit message	Last commit date
Latest commit History 85 Commits
bowtie2-alignment		bowtie2-alignment
bw2-short-output		bw2-short-output
code		code
fastq-files		fastq-files
fastqc-results		fastqc-results
reference/full		reference/full
DESeqAnalysis.R		DESeqAnalysis.R
Picture1.pdf		Picture1.pdf
Picture2.pdf		Picture2.pdf
README.md		README.md
RNA-seq-project-Marya.ipynb		RNA-seq-project-Marya.ipynb
brookesfinal-Copy1.ipynb		brookesfinal-Copy1.ipynb
brookesfinal.ipynb		brookesfinal.ipynb
bto notebook.ipynb		bto notebook.ipynb
convertSAMtoBAM.py		convertSAMtoBAM.py
foldchangegraph.jpg		foldchangegraph.jpg
indexgenome.py		indexgenome.py
stringtieABUNDANCE.py		stringtieABUNDANCE.py
stringtieMERGE.py		stringtieMERGE.py
stringtieMERGEALL.py		stringtieMERGEALL.py
transcript_count_matrix.csv		transcript_count_matrix.csv