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PEPPER-Margin-DeepVariant r0.6
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@kishwarshafin kishwarshafin released this 03 Nov 03:24
· 2 commits to r0.6 since this release
r0.6
e5175aa

Release 0.6 comes with these updates:

  • At least 3x runtime acceleration on Oxford Nanopore and 2x acceleration on PacBio-HiFi variant calling pipeline.
  • Support for R10.4 Q20 variant calling.
  • Wide range of parameters available for tuning PEPPER-DeepVariant to user's mode of usage.
  • Ability to provide customized models for PEPPER-DeepVariant.

Will be shortly added to this release:

  • Full training documentation on how to train a model end-to-end.
  • Documentation and explanation of the available parameters and their downstream effect in variant calling.
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