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kSNP4 attempts to load all genome data into RAM at once during find_snps phase. #3

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kissake opened this issue Nov 19, 2022 · 0 comments
Open

kSNP4 attempts to load all genome data into RAM at once during find_snps phase. #3

kissake opened this issue Nov 19, 2022 · 0 comments
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kissake commented Nov 19, 2022

kSNP4 attempts to load all genome data into RAM at once during find_snps phase.

This means that if the totality of the genome data does not fit into RAM, the system will begin to swap. What happens after that depends on how much greater the data is than RAM, but whatever happens, it will happen slowly. Then maybe the kernel will start killing various processes (OOM killer).
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