Merge pull request #5 from korem-lab/doc_edit #23
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| # much of this is taken from the Empress main.yml file and the Gemelli main.yml | |
| name: Main CI | |
| on: | |
| pull_request: | |
| branches: | |
| - main | |
| push: | |
| branches: | |
| - main | |
| jobs: | |
| main-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macOS-latest, r: 'release'} | |
| - {os: windows-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'release'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| persist-credentials: false | |
| fetch-depth: 0 | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniconda-version: "latest" | |
| activate-environment: foo | |
| - name: Install conda reqs | |
| shell: bash -l {0} | |
| run: conda install --file ci/conda_requirements.txt -c biocore | |
| - name: Install DEBIAS-M | |
| shell: bash -l {0} | |
| run: pip install -e . | |
| - name: Run tests & coverage | |
| shell: bash -l {0} | |
| run: nosetests -v debiasm --cover-package=debiasm | |